1 HisKA#1
822-883 aa · 62 aa · 4.7% of protein
Raw token
HisKA:822:0.00000000000121:883:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS07935
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1321 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS07935Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1321 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage351 / 1321 aa (26.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1321 aa
Domain-by-domain annotation5 items
2 HATPase_c#2
930-1044 aa · 115 aa · 8.7% of protein
Raw token
HATPase_c:930:7.08e-29:1044:115:1093 Response_reg#3
1076-1187 aa · 112 aa · 8.5% of protein
Raw token
Response_reg:1076:3.44e-33:1187:113:1114 HTH_AraC#4
1241-1270 aa · 30 aa · 2.3% of protein
Raw token
HTH_AraC:1241:0.0000227:1270:30:425 HTH_AraC#5
1287-1318 aa · 32 aa · 2.4% of protein
Raw token
HTH_AraC:1287:0.000000124:1318:32:42- Raw architecture: HisKA:822:0.00000000000121:883:62:64#HATPase_c:930:7.08e-29:1044:115:109#Response_reg:1076:3.44e-33:1187:113:111#HTH_AraC:1241:0.0000227:1270:30:42#HTH_AraC:1287:0.000000124:1318:32:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00087
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1105250-1109215Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01717RefSeq proteinWP_198136847.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00087Context members
BACINT_RS07935
Partner locus tags
BACINT_RS07935
Partner old locus tags
BACINT_01717
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_198136847.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS07935Primary locus identifier stored in the genes table.
Old locus tagBACINT_01717Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval1 105 250-1 109 215 nt3 966 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 105 250-1 109 215 ntGCF_000172175::NZ_ABJL02000007.1::G00087
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00087Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 105 250-1 109 215 nt3 966 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 105 250 nt1 109 215 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS07935GCF_000172175#BACINT_RS07935
HKHybridCurrent focus
1 105 250-1 109 215 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS07935The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_187 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0114789
Simplified PFAM architecture for HKOC_0114789
PFAM domain coverage: 466 / 1321 aa (35.3%)
1 aa1321 aa
Reg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[38-59] | Reg_prop[452-470] | Y_Y_Y[709-771] | HisKA[825-883] | HATPase_c[931-1043] | Response_reg[1076-1186] | HTH_18[1242-1320]
- Domain count: 7
- Matched identifier: HKOC_0114789
- Positioned domains: Reg_prop 38-59 ; Reg_prop 452-470 ; Y_Y_Y 709-771 ; HisKA 825-883 ; HATPase_c 931-1043 ; Response_reg 1076-1186 ; HTH_18 1242-1320
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS07935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key