1 PAS_4#1
224-333 aa · 110 aa · 19.0% of protein
Raw token
PAS_4:224:0.000000000505:333:111:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS07915
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS07915Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 580 aa (49.0%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 HisKA#2
353-417 aa · 65 aa · 11.2% of protein
Raw token
HisKA:353:7.6e-22:417:65:643 HATPase_c#3
463-571 aa · 109 aa · 18.8% of protein
Raw token
HATPase_c:463:1.41e-29:571:110:109- Raw architecture: PAS_4:224:0.000000000505:333:111:110#HisKA:353:7.6e-22:417:65:64#HATPase_c:463:1.41e-29:571:110:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00086
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1096788-1098530Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01712RefSeq proteinWP_007662075.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00086Context members
BACINT_RS07915
Partner locus tags
BACINT_RS07915
Partner old locus tags
BACINT_01712
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007662075.1Primary protein accession used for annex mappings.
UniProt accessionB3C817Primary UniProt accession resolved in the annex database.
UniProt IDB3C817_9BACEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS07915Primary locus identifier stored in the genes table.
Old locus tagBACINT_01712Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval1 096 788-1 098 530 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 096 788-1 098 530 ntGCF_000172175::NZ_ABJL02000007.1::G00086
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00086Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 096 788-1 098 530 nt1 743 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 096 788 nt1 098 530 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS07915GCF_000172175#BACINT_RS07915
HKClassicCurrent focus
1 096 788-1 098 530 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS07915The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1161784
Simplified PFAM architecture for HKOC_1161784
PFAM domain coverage: 281 / 580 aa (48.4%)
1 aa580 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[224-331] | HisKA[353-417] | HATPase_c[463-570]
- Domain count: 3
- Matched identifier: HKOC_1161784
- Positioned domains: PAS_4 224-331 ; HisKA 353-417 ; HATPase_c 463-570
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS07915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key