1 PAS_4#1
50-155 aa · 106 aa · 27.2% of protein
Raw token
PAS_4:50:0.000000000014:155:112:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS07285
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength390 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS07285Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length390 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage277 / 390 aa (71.0%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa390 aa
Domain-by-domain annotation3 items
2 HisKA#2
175-239 aa · 65 aa · 16.7% of protein
Raw token
HisKA:175:0.0000000000000139:239:65:643 HATPase_c#3
284-389 aa · 106 aa · 27.2% of protein
Raw token
HATPase_c:284:2.71e-34:389:107:109- Raw architecture: PAS_4:50:0.000000000014:155:112:110#HisKA:175:0.0000000000000139:239:65:64#HATPase_c:284:2.71e-34:389:107:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00083
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span931941-933113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01580RefSeq proteinWP_007661867.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00083Context members
BACINT_RS07285
Partner locus tags
BACINT_RS07285
Partner old locus tags
BACINT_01580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007661867.1Primary protein accession used for annex mappings.
UniProt accessionB3C7N9Primary UniProt accession resolved in the annex database.
UniProt IDB3C7N9_9BACEDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS07285Primary locus identifier stored in the genes table.
Old locus tagBACINT_01580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval931 941-933 113 nt1 173 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span931 941-933 113 ntGCF_000172175::NZ_ABJL02000007.1::G00083
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00083Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span931 941-933 113 nt1 173 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
931 941 nt933 113 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS07285GCF_000172175#BACINT_RS07285
HKClassicCurrent focus
931 941-933 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS07285The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2527465
Simplified PFAM architecture for HKOC_2527465
PFAM domain coverage: 277 / 390 aa (71.0%)
1 aa390 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[50-155] | HisKA[175-239] | HATPase_c[284-389]
- Domain count: 3
- Matched identifier: HKOC_2527465
- Positioned domains: PAS_4 50-155 ; HisKA 175-239 ; HATPase_c 284-389
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS07285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key