1 HisKA#1
825-890 aa · 66 aa · 4.9% of protein
Raw token
HisKA:825:0.0000000000258:890:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS07100
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1351 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS07100Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1351 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage329 / 1351 aa (24.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1351 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
936-1048 aa · 113 aa · 8.4% of protein
Raw token
HATPase_c:936:1.07e-22:1048:113:1093 Response_reg#3
1095-1206 aa · 112 aa · 8.3% of protein
Raw token
Response_reg:1095:1.99e-32:1206:113:1114 HTH_AraC#4
1303-1340 aa · 38 aa · 2.8% of protein
Raw token
HTH_AraC:1303:0.0000552:1340:38:42- Raw architecture: HisKA:825:0.0000000000258:890:66:64#HATPase_c:936:1.07e-22:1048:113:109#Response_reg:1095:1.99e-32:1206:113:111#HTH_AraC:1303:0.0000552:1340:38:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00080
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span846765-850820Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01542RefSeq proteinWP_044154821.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00080Context members
BACINT_RS07100
Partner locus tags
BACINT_RS07100
Partner old locus tags
BACINT_01542
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044154821.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS07100Primary locus identifier stored in the genes table.
Old locus tagBACINT_01542Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval846 765-850 820 nt4 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span846 765-850 820 ntGCF_000172175::NZ_ABJL02000007.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span846 765-850 820 nt4 056 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
846 765 nt850 820 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS07100GCF_000172175#BACINT_RS07100
HKHybridCurrent focus
846 765-850 820 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS07100The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_187 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0093215
Simplified PFAM architecture for HKOC_0093215
PFAM domain coverage: 480 / 1351 aa (35.5%)
1 aa1351 aa
Reg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[32-55] | Reg_prop[575-597] | Y_Y_Y[707-770] | HisKA[826-890] | HATPase_c[936-1049] | Response_reg[1095-1205] | HTH_18[1263-1341]
- Domain count: 7
- Matched identifier: HKOC_0093215
- Positioned domains: Reg_prop 32-55 ; Reg_prop 575-597 ; Y_Y_Y 707-770 ; HisKA 826-890 ; HATPase_c 936-1049 ; Response_reg 1095-1205 ; HTH_18 1263-1341
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS07100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key