1 HisKA#1
877-940 aa · 64 aa · 4.6% of protein
Raw token
HisKA:877:0.0000000000251:940:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS06980
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1391 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS06980Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1391 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage334 / 1391 aa (24.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1391 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
989-1106 aa · 118 aa · 8.5% of protein
Raw token
HATPase_c:989:1.16e-26:1106:118:1093 Response_reg#3
1142-1253 aa · 112 aa · 8.1% of protein
Raw token
Response_reg:1142:1.47e-31:1253:113:1114 HTH_AraC#4
1346-1385 aa · 40 aa · 2.9% of protein
Raw token
HTH_AraC:1346:0.0000336:1385:40:42- Raw architecture: HisKA:877:0.0000000000251:940:64:64#HATPase_c:989:1.16e-26:1106:118:109#Response_reg:1142:1.47e-31:1253:113:111#HTH_AraC:1346:0.0000336:1385:40:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00078
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span808433-812608Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01516RefSeq proteinWP_007661739.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00078Context members
BACINT_RS06980
Partner locus tags
BACINT_RS06980
Partner old locus tags
BACINT_01516
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007661739.1Primary protein accession used for annex mappings.
UniProt accessionB3CAK1Primary UniProt accession resolved in the annex database.
UniProt IDB3CAK1_9BACEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS06980Primary locus identifier stored in the genes table.
Old locus tagBACINT_01516Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval808 433-812 608 nt4 176 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span808 433-812 608 ntGCF_000172175::NZ_ABJL02000007.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span808 433-812 608 nt4 176 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
808 433 nt812 608 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS06980GCF_000172175#BACINT_RS06980
HKHybridCurrent focus
808 433-812 608 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS06980The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_188 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0070764
Simplified PFAM architecture for HKOC_0070764
PFAM domain coverage: 494 / 1391 aa (35.5%)
1 aa1391 aa
Reg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[40-62] | Reg_prop[565-583] | Reg_prop[607-630] | Y_Y_Y[742-804] | HisKA[879-940] | HATPase_c[990-1106] | Response_reg[1142-1252] | HTH_18[1310-1384]
- Domain count: 8
- Matched identifier: HKOC_0070764
- Positioned domains: Reg_prop 40-62 ; Reg_prop 565-583 ; Reg_prop 607-630 ; Y_Y_Y 742-804 ; HisKA 879-940 ; HATPase_c 990-1106 ; Response_reg 1142-1252 ; HTH_18 1310-1384
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS06980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key