P2CS-Web

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Gene detail

BACINT_RS05815

Histidine kinase, Hybrid

Bacteroides intestinalis DSM 17393 · GCF_000172175

Open genomeOpen selected clusterRefSeqUniProt
ClassHKTypeHybridLength1341 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS05815Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Selected clusterHKOC_0101024Run 6 · 8 sequences · id 100% · cov 80% · representative
External referencesWP_007661323.1 · A0A415NFZ7 · MIST4 BACINT_RS05815RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_regHTH_AraC
Protein length1341 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage364 / 1341 aa (27.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Domain view
NativeBiotite-like
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1341 aa
HisKA: 830-896 aa (67 aa)1HATPase_c: 943-1051 aa (109 aa)2Response_reg: 1097-1207 aa (111 aa)3HTH_AraC: 1249-1291 aa (43 aa)4HTH_AraC: 1306-1339 aa (34 aa)
Domain-by-domain annotation5 items
1 HisKA#1
830-896 aa · 67 aa · 5.0% of protein
Raw tokenHisKA:830:1.22e-16:896:67:64
2 HATPase_c#2
943-1051 aa · 109 aa · 8.1% of protein
Raw tokenHATPase_c:943:8.25e-16:1051:110:109
3 Response_reg#3
1097-1207 aa · 111 aa · 8.3% of protein
Raw tokenResponse_reg:1097:2e-34:1207:112:111
4 HTH_AraC#4
1249-1291 aa · 43 aa · 3.2% of protein
Raw tokenHTH_AraC:1249:0.000000768:1291:43:42
5 HTH_AraC#5
1306-1339 aa · 34 aa · 2.5% of protein
Raw tokenHTH_AraC:1306:0.0000314:1339:34:42
  • Raw architecture: HisKA:830:1.22e-16:896:67:64#HATPase_c:943:8.25e-16:1051:110:109#Response_reg:1097:2e-34:1207:112:111#HTH_AraC:1249:0.000000768:1291:43:42#HTH_AraC:1306:0.0000314:1339:34:42
  • Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC
  • TM description: N/A
  • TMPRED source: No TMPRED file loaded
  • TMPRED segments: N/A
  • Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00074
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span475552-479577Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01267RefSeq proteinWP_007661323.1
Context group IDGCF_000172175::NZ_ABJL02000007.1::G00074
Context members
BACINT_RS05815
Partner locus tags
BACINT_RS05815
Partner old locus tags
BACINT_01267
Partner protein IDs
WP_007661323.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_007661323.1Primary protein accession used for annex mappings.
UniProt accessionA0A415NFZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A415NFZ7_9BACEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
Open RefSeqOpen UniProt accession
GO terms
GO:0003700GO:0000155GO:0043565

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBACINT_RS05815Primary locus identifier stored in the genes table.
Old locus tagBACINT_01267Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval475 552-479 577 nt4 026 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span475 552-479 577 ntGCF_000172175::NZ_ABJL02000007.1::G00074
Quick actions
Open genomeSearch genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000172175::NZ_ABJL02000007.1::G00074
Graphic view
CompactBiotite-like
Zoom
Full windowFocus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span475 552-479 577 nt4 026 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
475 552 nt479 577 nt
+-BACINT_RS05815
Neighborhood gene cards

1 gene in the current local neighborhood.

BACINT_RS05815GCF_000172175#BACINT_RS05815
HKHybridCurrent focus

475 552-479 577 nt · Forward (+)

Old locus BACINT_01267RefSeq WP_007661323.1
Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster
HKOC_0101024HK
Run 68 sequencesid 100%cov 80%
PFAM Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
Current gene is the representative sequence.
Selected clusterHKOC_0101024Run 6 · HK · 8 sequences
Representative sequenceGCF_000172175#BACINT_RS05815The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1810 domains in the representative PFAM annotation.
Open in cluster search

PFAM architecture for HKOC_0101024

Simplified PFAM architecture for HKOC_0101024

PFAM domain coverage: 538 / 1341 aa (40.1%)

1 aa1341 aa
Reg_prop: 36-58 aaReg_prop: 81-103 aaReg_prop: 309-331 aaReg_prop: 357-379 aaReg_prop: 577-599 aaY_Y_Y: 713-775 aaHisKA: 831-895 aaHATPase_c: 945-1051 aaHATPase_cResponse_reg: 1097-1207 aaResponse_regHTH_18: 1263-1339 aaHTH_18
Reg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
  • Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
  • Raw architecture: Reg_prop[36-58] | Reg_prop[81-103] | Reg_prop[309-331] | Reg_prop[357-379] | Reg_prop[577-599] | Y_Y_Y[713-775] | HisKA[831-895] | HATPase_c[945-1051] | Response_reg[1097-1207] | HTH_18[1263-1339]
  • Domain count: 10
  • Matched identifier: HKOC_0101024
  • Positioned domains: Reg_prop 36-58 ; Reg_prop 81-103 ; Reg_prop 309-331 ; Reg_prop 357-379 ; Reg_prop 577-599 ; Y_Y_Y 713-775 ; HisKA 831-895 ; HATPase_c 945-1051 ; Response_reg 1097-1207 ; HTH_18 1263-1339
Cluster members and taxonomy
Visualization
SankeyMember list

Representative gene: GCF_000172175#BACINT_RS05815

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Open genomeSearch genes in genomeSearch HK genesNCBI assembly files

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