P2CS-Web

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Gene detail

BACINT_RS05740

Histidine kinase, Hybrid

Bacteroides intestinalis DSM 17393 · GCF_000172175

Open genomeOpen selected clusterRefSeqUniProt
ClassHKTypeHybridLength1316 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS05740Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Selected clusterHKOC_0117580Run 6 · 1 sequences · id 100% · cov 80% · representative
External referencesWP_007661294.1 · B3C9T7 · MIST4 BACINT_RS05740RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_regHTH_AraC
Protein length1316 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage335 / 1316 aa (25.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Domain view
NativeBiotite-like
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1316 aa
HisKA: 819-885 aa (67 aa)1HATPase_c: 931-1020 aa (90 aa)2Response_reg: 1073-1179 aa (107 aa)3HTH_AraC: 1232-1266 aa (35 aa)HTH_AraC: 1281-1316 aa (36 aa)
Domain-by-domain annotation5 items
1 HisKA#1
819-885 aa · 67 aa · 5.1% of protein
Raw tokenHisKA:819:0.00000000000000647:885:67:64
2 HATPase_c#2
931-1020 aa · 90 aa · 6.8% of protein
Raw tokenHATPase_c:931:4.28e-18:1020:91:109
3 Response_reg#3
1073-1179 aa · 107 aa · 8.1% of protein
Raw tokenResponse_reg:1073:4.73e-30:1179:108:111
4 HTH_AraC#4
1232-1266 aa · 35 aa · 2.7% of protein
Raw tokenHTH_AraC:1232:0.00000766:1266:35:42
5 HTH_AraC#5
1281-1316 aa · 36 aa · 2.7% of protein
Raw tokenHTH_AraC:1281:0.00000445:1316:36:42
  • Raw architecture: HisKA:819:0.00000000000000647:885:67:64#HATPase_c:931:4.28e-18:1020:91:109#Response_reg:1073:4.73e-30:1179:108:111#HTH_AraC:1232:0.00000766:1266:35:42#HTH_AraC:1281:0.00000445:1316:36:42
  • Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC
  • TM description: N/A
  • TMPRED source: No TMPRED file loaded
  • TMPRED segments: N/A
  • Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00073
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span449070-453020Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01251RefSeq proteinWP_007661294.1
Context group IDGCF_000172175::NZ_ABJL02000007.1::G00073
Context members
BACINT_RS05740
Partner locus tags
BACINT_RS05740
Partner old locus tags
BACINT_01251
Partner protein IDs
WP_007661294.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_007661294.1Primary protein accession used for annex mappings.
UniProt accessionB3C9T7Primary UniProt accession resolved in the annex database.
UniProt IDB3C9T7_9BACEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
Open RefSeqOpen UniProt accession
GO terms
GO:0003700GO:0000155GO:0043565

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBACINT_RS05740Primary locus identifier stored in the genes table.
Old locus tagBACINT_01251Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval449 070-453 020 nt3 951 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span449 070-453 020 ntGCF_000172175::NZ_ABJL02000007.1::G00073
Quick actions
Open genomeSearch genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000172175::NZ_ABJL02000007.1::G00073
Graphic view
CompactBiotite-like
Zoom
Full windowFocus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span449 070-453 020 nt3 951 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
449 070 nt453 020 nt
+-BACINT_RS05740
Neighborhood gene cards

1 gene in the current local neighborhood.

BACINT_RS05740GCF_000172175#BACINT_RS05740
HKHybridCurrent focus

449 070-453 020 nt · Forward (+)

Old locus BACINT_01251RefSeq WP_007661294.1
Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster
HKOC_0117580HK
Run 61 sequencesid 100%cov 80%
PFAM Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
Current gene is the representative sequence.
Selected clusterHKOC_0117580Run 6 · HK · 1 sequences
Representative sequenceGCF_000172175#BACINT_RS05740The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1812 domains in the representative PFAM annotation.
Open in cluster search

PFAM architecture for HKOC_0117580

Simplified PFAM architecture for HKOC_0117580

PFAM domain coverage: 566 / 1316 aa (43.0%)

1 aa1316 aa
Reg_prop: 38-60 aaReg_prop: 81-103 aaReg_prop: 301-322 aaReg_prop: 349-369 aaReg_prop: 475-496 aaReg_prop: 522-544 aaReg_prop: 566-588 aaY_Y_Y: 701-765 aaHisKA: 820-884 aaHATPase_c: 931-1024 aaHATPase_cResponse_reg: 1073-1179 aaResponse_regHTH_18: 1238-1315 aaHTH_18
Reg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
  • Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
  • Raw architecture: Reg_prop[38-60] | Reg_prop[81-103] | Reg_prop[301-322] | Reg_prop[349-369] | Reg_prop[475-496] | Reg_prop[522-544] | Reg_prop[566-588] | Y_Y_Y[701-765] | HisKA[820-884] | HATPase_c[931-1024] | Response_reg[1073-1179] | HTH_18[1238-1315]
  • Domain count: 12
  • Matched identifier: HKOC_0117580
  • Positioned domains: Reg_prop 38-60 ; Reg_prop 81-103 ; Reg_prop 301-322 ; Reg_prop 349-369 ; Reg_prop 475-496 ; Reg_prop 522-544 ; Reg_prop 566-588 ; Y_Y_Y 701-765 ; HisKA 820-884 ; HATPase_c 931-1024 ; Response_reg 1073-1179 ; HTH_18 1238-1315
Cluster members and taxonomy
Visualization
SankeyMember list

Representative gene: GCF_000172175#BACINT_RS05740

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Open genomeSearch genes in genomeSearch HK genesNCBI assembly files

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