1 HisKA#1
780-845 aa · 66 aa · 5.1% of protein
Raw token
HisKA:780:0.0000000125:845:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS05175
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1288 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS05175Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1288 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage325 / 1288 aa (25.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1288 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
892-1003 aa · 112 aa · 8.7% of protein
Raw token
HATPase_c:892:9.45e-24:1003:112:1093 Response_reg#3
1043-1154 aa · 112 aa · 8.7% of protein
Raw token
Response_reg:1043:1.79e-32:1154:113:1114 HTH_AraC#4
1253-1287 aa · 35 aa · 2.7% of protein
Raw token
HTH_AraC:1253:0.0000000029:1287:35:42- Raw architecture: HisKA:780:0.0000000125:845:66:64#HATPase_c:892:9.45e-24:1003:112:109#Response_reg:1043:1.79e-32:1154:113:111#HTH_AraC:1253:0.0000000029:1287:35:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00067
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span298000-301866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_01132RefSeq proteinWP_007661142.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00067Context members
BACINT_RS05175
Partner locus tags
BACINT_RS05175
Partner old locus tags
BACINT_01132
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007661142.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4KVH5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4KVH5_9BACEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS05175Primary locus identifier stored in the genes table.
Old locus tagBACINT_01132Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval298 000-301 866 nt3 867 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span298 000-301 866 ntGCF_000172175::NZ_ABJL02000007.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span298 000-301 866 nt3 867 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
298 000 nt301 866 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS05175GCF_000172175#BACINT_RS05175
HKHybridCurrent focus
298 000-301 866 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS05175The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_187 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0127132
Simplified PFAM architecture for HKOC_0127132
PFAM domain coverage: 471 / 1288 aa (36.6%)
1 aa1288 aa
Reg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[336-359] | Reg_prop[544-566] | Y_Y_Y[679-739] | HisKA[780-844] | HATPase_c[892-1002] | Response_reg[1043-1154] | HTH_18[1213-1287]
- Domain count: 7
- Matched identifier: HKOC_0127132
- Positioned domains: Reg_prop 336-359 ; Reg_prop 544-566 ; Y_Y_Y 679-739 ; HisKA 780-844 ; HATPase_c 892-1002 ; Response_reg 1043-1154 ; HTH_18 1213-1287
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS05175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key