1 HisKA#1
558-626 aa · 69 aa · 8.8% of protein
Raw token
HisKA:558:5e-16:626:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS04405
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength783 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS04405Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length783 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 783 aa (22.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa783 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
673-779 aa · 107 aa · 13.7% of protein
Raw token
HATPase_c:673:1e-28:779:108:109- Raw architecture: HisKA:558:5e-16:626:69:64#HATPase_c:673:1e-28:779:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000007.1::G00062
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span79554-81905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00969RefSeq proteinWP_007660903.1
Context group ID
GCF_000172175::NZ_ABJL02000007.1::G00062Context members
BACINT_RS04405
Partner locus tags
BACINT_RS04405
Partner old locus tags
BACINT_00969
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007660903.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4L2S4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4L2S4_9BACEDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS04405Primary locus identifier stored in the genes table.
Old locus tagBACINT_00969Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000007.1Sequence record reported by the local genomic context database.
Genomic interval79 554-81 905 nt2 352 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 554-81 905 ntGCF_000172175::NZ_ABJL02000007.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000007.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000007.1All displayed genes belong to this local TCS context.
Neighborhood span79 554-81 905 nt2 352 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 554 nt81 905 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS04405GCF_000172175#BACINT_RS04405
HKClassicCurrent focus
79 554-81 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS04405The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0588085
Simplified PFAM architecture for HKOC_0588085
PFAM domain coverage: 175 / 783 aa (22.3%)
1 aa783 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-626] | HATPase_c[673-778]
- Domain count: 2
- Matched identifier: HKOC_0588085
- Positioned domains: HisKA 558-626 ; HATPase_c 673-778
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS04405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key