Gene detail

BACINT_RS04130

Histidine kinase, Hybrid

Bacteroides intestinalis DSM 17393 · GCF_000172175

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength1370 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000172175#BACINT_RS04130Stable P2CS identifier used across views.

GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Selected clusterHKOC_0081594Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_007660795.1 · B3C7L4 · MIST4 BACINT_RS04130RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_regHTH_AraC

Protein length1370 aaLength used to scale native and Biotite-like views.

Annotated domains55 with usable coordinates.

Domain coverage360 / 1370 aa (26.3%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraCSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1370 aa

Domain-by-domain annotation5 items

1 HisKA#1

830-895 aa · 66 aa · 4.8% of protein

Raw tokenHisKA:830:0.000000000000044:895:66:64

2 HATPase_c#2

942-1056 aa · 115 aa · 8.4% of protein

Raw tokenHATPase_c:942:6.68e-24:1056:115:109

3 Response_reg#3

1104-1215 aa · 112 aa · 8.2% of protein

Raw tokenResponse_reg:1104:1.36e-32:1215:113:111

4 HTH_AraC#4

1266-1300 aa · 35 aa · 2.6% of protein

Raw tokenHTH_AraC:1266:0.00000344:1300:35:42

5 HTH_AraC#5

1317-1348 aa · 32 aa · 2.3% of protein

Raw tokenHTH_AraC:1317:0.0000469:1348:32:42

Raw architecture: HisKA:830:0.000000000000044:895:66:64#HATPase_c:942:6.68e-24:1056:115:109#Response_reg:1104:1.36e-32:1215:113:111#HTH_AraC:1266:0.00000344:1300:35:42#HTH_AraC:1317:0.0000469:1348:32:42
Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000172175::NZ_ABJL02000006.1::G00098

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span562053-566165Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBACINT_00906RefSeq proteinWP_007660795.1

Context group IDGCF_000172175::NZ_ABJL02000006.1::G00098

Context members

BACINT_RS04130

Partner locus tags

BACINT_RS04130

Partner old locus tags

BACINT_00906

Partner protein IDs

WP_007660795.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_007660795.1Primary protein accession used for annex mappings.

UniProt accessionB3C7L4Primary UniProt accession resolved in the annex database.

UniProt IDB3C7L4_9BACEDisplay identifier provided by UniProt.

GO / PubMed4 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005524 GO:0003700 GO:0000155 GO:0043565

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBACINT_RS04130Primary locus identifier stored in the genes table.

Old locus tagBACINT_00906Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_ABJL02000006.1Sequence record reported by the local genomic context database.

Genomic interval562 053-566 165 nt4 113 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span562 053-566 165 ntGCF_000172175::NZ_ABJL02000006.1::G00098

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000172175::NZ_ABJL02000006.1::G00098

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_ABJL02000006.1All displayed genes belong to this local TCS context.

Neighborhood span562 053-566 165 nt4 113 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

562 053 nt566 165 nt

+-BACINT_RS04130

Neighborhood gene cards

1 gene in the current local neighborhood.

BACINT_RS04130GCF_000172175#BACINT_RS04130

HKHybridCurrent focus

562 053-566 165 nt · Forward (+)

Old locus BACINT_00906RefSeq WP_007660795.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0081594HK

Run 61 sequencesid 100%cov 80%

PFAM Reg_prop + Reg_prop + Reg_prop + Reg_prop + HisKA + HATPase_c + Response_reg + HTH_18

Current gene is the representative sequence.

Selected clusterHKOC_0081594Run 6 · HK · 1 sequences

Representative sequenceGCF_000172175#BACINT_RS04130The current gene is the representative for this cluster.

PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + HisKA + HATPase_c + Response_reg + HTH_188 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0081594

Simplified PFAM architecture for HKOC_0081594

PFAM domain coverage: 458 / 1370 aa (33.4%)

1 aa1370 aa

Reg_propReg_propReg_propReg_propHisKAHATPase_cResponse_regHTH_18

Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + HisKA + HATPase_c + Response_reg + HTH_18
Raw architecture: Reg_prop[33-55] | Reg_prop[350-371] | Reg_prop[398-416] | Reg_prop[539-560] | HisKA[830-895] | HATPase_c[942-1057] | Response_reg[1104-1214] | HTH_18[1272-1350]
Domain count: 8
Matched identifier: HKOC_0081594
Positioned domains: Reg_prop 33-55 ; Reg_prop 350-371 ; Reg_prop 398-416 ; Reg_prop 539-560 ; HisKA 830-895 ; HATPase_c 942-1057 ; Response_reg 1104-1214 ; HTH_18 1272-1350

Cluster members and taxonomy

Representative gene: GCF_000172175#BACINT_RS04130

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175

AssemblyASM17217v1 · Contigreference genome · haploid

Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393

Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key