1 HisKA#1
789-853 aa · 65 aa · 5.0% of protein
Raw token
HisKA:789:0.00000000116:853:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS03945
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS03945Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1302 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage318 / 1302 aa (24.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1302 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
909-1012 aa · 104 aa · 8.0% of protein
Raw token
HATPase_c:909:3.74e-21:1012:105:1093 Response_reg#3
1054-1165 aa · 112 aa · 8.6% of protein
Raw token
Response_reg:1054:1.08e-27:1165:112:1114 HTH_AraC#4
1261-1297 aa · 37 aa · 2.8% of protein
Raw token
HTH_AraC:1261:0.0000000000381:1297:37:42- Raw architecture: HisKA:789:0.00000000116:853:65:64#HATPase_c:909:3.74e-21:1012:105:109#Response_reg:1054:1.08e-27:1165:112:111#HTH_AraC:1261:0.0000000000381:1297:37:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000006.1::G00097
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span505600-509508Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00866RefSeq proteinWP_007660730.1
Context group ID
GCF_000172175::NZ_ABJL02000006.1::G00097Context members
BACINT_RS03945
Partner locus tags
BACINT_RS03945
Partner old locus tags
BACINT_00866
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007660730.1Primary protein accession used for annex mappings.
UniProt accessionB3C7H5Primary UniProt accession resolved in the annex database.
UniProt IDB3C7H5_9BACEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS03945Primary locus identifier stored in the genes table.
Old locus tagBACINT_00866Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000006.1Sequence record reported by the local genomic context database.
Genomic interval505 600-509 508 nt3 909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span505 600-509 508 ntGCF_000172175::NZ_ABJL02000006.1::G00097
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000006.1::G00097Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000006.1All displayed genes belong to this local TCS context.
Neighborhood span505 600-509 508 nt3 909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
505 600 nt509 508 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS03945GCF_000172175#BACINT_RS03945
HKHybridCurrent focus
505 600-509 508 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS03945The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + HisKA + HATPase_c + Response_reg + HTH_186 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0123554
Simplified PFAM architecture for HKOC_0123554
PFAM domain coverage: 405 / 1302 aa (31.1%)
1 aa1302 aa
Reg_propReg_propHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[288-309] | Reg_prop[554-573] | HisKA[790-853] | HATPase_c[903-1011] | Response_reg[1054-1164] | HTH_18[1221-1299]
- Domain count: 6
- Matched identifier: HKOC_0123554
- Positioned domains: Reg_prop 288-309 ; Reg_prop 554-573 ; HisKA 790-853 ; HATPase_c 903-1011 ; Response_reg 1054-1164 ; HTH_18 1221-1299
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS03945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key