1 HisKA#1
299-364 aa · 66 aa · 8.5% of protein
Raw token
HisKA:299:0.00000000000000121:364:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS03740
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength772 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172175#BACINT_RS03740Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length772 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 772 aa (37.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa772 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
409-518 aa · 110 aa · 14.2% of protein
Raw token
HATPase_c:409:9.44e-29:518:110:1093 Response_reg#3
540-650 aa · 111 aa · 14.4% of protein
Raw token
Response_reg:540:9.83e-22:650:112:111- Raw architecture: HisKA:299:0.00000000000000121:364:66:64#HATPase_c:409:9.44e-29:518:110:109#Response_reg:540:9.83e-22:650:112:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172175::NZ_ABJL02000006.1::G00096
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span436911-440544Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00816RefSeq proteinWP_004291467.1
Context group ID
GCF_000172175::NZ_ABJL02000006.1::G00096Context members
BACINT_RS03735BACINT_RS03740
Partner locus tags
BACINT_RS03735BACINT_RS03740
Partner old locus tags
BACINT_00815BACINT_00816
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004291467.1Primary protein accession used for annex mappings.
UniProt accessionA0A3Q9ISM1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3Q9ISM1_9BACTDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS03740Primary locus identifier stored in the genes table.
Old locus tagBACINT_00816Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000006.1Sequence record reported by the local genomic context database.
Genomic interval438 226-440 544 nt2 319 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span436 911-440 544 ntGCF_000172175::NZ_ABJL02000006.1::G00096
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000006.1::G00096Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000006.1All displayed genes belong to this local TCS context.
Neighborhood span436 911-440 544 nt3 634 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
436 911 nt440 544 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACINT_RS03735GCF_000172175#BACINT_RS03735
RRNtrC
436 911-438 233 nt · Reverse (-)
BACINT_RS03740GCF_000172175#BACINT_RS03740
HKHybridCurrent focus
438 226-440 544 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154105#PARMER_RS05665Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0613829
Simplified PFAM architecture for HKOC_0613829
PFAM domain coverage: 283 / 772 aa (36.7%)
1 aa772 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[300-364] | HATPase_c[410-516] | Response_reg[540-650]
- Domain count: 3
- Matched identifier: HKOC_0613829
- Positioned domains: HisKA 300-364 ; HATPase_c 410-516 ; Response_reg 540-650
Cluster members and taxonomy
Representative gene: GCF_000154105#PARMER_RS05665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key