1 HisKA#1
429-495 aa · 67 aa · 10.3% of protein
Raw token
HisKA:429:3.61e-18:495:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS03200
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength649 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172175#BACINT_RS03200Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length649 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 649 aa (27.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa649 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
540-649 aa · 110 aa · 16.9% of protein
Raw token
HATPase_c:540:8.39e-34:649:111:109- Raw architecture: HisKA:429:3.61e-18:495:67:64#HATPase_c:540:8.39e-34:649:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172175::NZ_ABJL02000006.1::G00095
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span285810-289876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00703RefSeq proteinWP_007660573.1
Context group ID
GCF_000172175::NZ_ABJL02000006.1::G00095Context members
BACINT_RS03195BACINT_RS03200
Partner locus tags
BACINT_RS03195BACINT_RS03200
Partner old locus tags
BACINT_00702BACINT_00703
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007660573.1Primary protein accession used for annex mappings.
UniProt accessionB3C713Primary UniProt accession resolved in the annex database.
UniProt IDB3C713_9BACEDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS03200Primary locus identifier stored in the genes table.
Old locus tagBACINT_00703Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000006.1Sequence record reported by the local genomic context database.
Genomic interval287 927-289 876 nt1 950 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span285 810-289 876 ntGCF_000172175::NZ_ABJL02000006.1::G00095
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000006.1::G00095Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000006.1All displayed genes belong to this local TCS context.
Neighborhood span285 810-289 876 nt4 067 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 810 nt289 876 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACINT_RS03195GCF_000172175#BACINT_RS03195
HKClassic
285 810-287 777 nt · Forward (+)
BACINT_RS03200GCF_000172175#BACINT_RS03200
HKClassicCurrent focus
287 927-289 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS03200The current gene is the representative for this cluster.
PFAM architectureTPR_12 + TPR_8 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0899010
Simplified PFAM architecture for HKOC_0899010
PFAM domain coverage: 269 / 649 aa (41.4%)
1 aa649 aa
TPR_12TPR_8HisKAHATPase_c
- Simplified architecture: TPR_12 + TPR_8 + HisKA + HATPase_c
- Raw architecture: TPR_12[136-204] | TPR_8[299-324] | HisKA[429-494] | HATPase_c[541-648]
- Domain count: 4
- Matched identifier: HKOC_0899010
- Positioned domains: TPR_12 136-204 ; TPR_8 299-324 ; HisKA 429-494 ; HATPase_c 541-648
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS03200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key