1 TPR_2#1
322-351 aa · 30 aa · 4.6% of protein
Raw token
TPR_2:322:0.0000988:351:30:34P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS03195
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength655 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172175#BACINT_RS03195Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
TPR_2HisKAHATPase_c
Protein length655 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage205 / 655 aa (31.3%)Merged over positioned domains only.
Domain description1 TPR_2,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa655 aa
Domain-by-domain annotation3 items
2 HisKA#2
436-503 aa · 68 aa · 10.4% of protein
Raw token
HisKA:436:6.03e-19:503:68:643 HATPase_c#3
548-654 aa · 107 aa · 16.3% of protein
Raw token
HATPase_c:548:6.2e-27:654:108:109- Raw architecture: TPR_2:322:0.0000988:351:30:34#HisKA:436:6.03e-19:503:68:64#HATPase_c:548:6.2e-27:654:108:109
- Domain description: 1 TPR_2,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172175::NZ_ABJL02000006.1::G00095
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span285810-289876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00702RefSeq proteinWP_007660572.1
Context group ID
GCF_000172175::NZ_ABJL02000006.1::G00095Context members
BACINT_RS03195BACINT_RS03200
Partner locus tags
BACINT_RS03195BACINT_RS03200
Partner old locus tags
BACINT_00702BACINT_00703
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007660572.1Primary protein accession used for annex mappings.
UniProt accessionB3C712Primary UniProt accession resolved in the annex database.
UniProt IDB3C712_9BACEDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS03195Primary locus identifier stored in the genes table.
Old locus tagBACINT_00702Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000006.1Sequence record reported by the local genomic context database.
Genomic interval285 810-287 777 nt1 968 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span285 810-289 876 ntGCF_000172175::NZ_ABJL02000006.1::G00095
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000006.1::G00095Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000006.1All displayed genes belong to this local TCS context.
Neighborhood span285 810-289 876 nt4 067 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
285 810 nt289 876 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACINT_RS03195GCF_000172175#BACINT_RS03195
HKClassicCurrent focus
285 810-287 777 nt · Forward (+)
BACINT_RS03200GCF_000172175#BACINT_RS03200
HKClassic
287 927-289 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS03195The current gene is the representative for this cluster.
PFAM architectureTPR_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0883350
Simplified PFAM architecture for HKOC_0883350
PFAM domain coverage: 199 / 655 aa (30.4%)
1 aa655 aa
TPR_8HisKAHATPase_c
- Simplified architecture: TPR_8 + HisKA + HATPase_c
- Raw architecture: TPR_8[328-352] | HisKA[436-503] | HATPase_c[549-654]
- Domain count: 3
- Matched identifier: HKOC_0883350
- Positioned domains: TPR_8 328-352 ; HisKA 436-503 ; HATPase_c 549-654
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS03195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key