1 HisKA#1
819-886 aa · 68 aa · 5.1% of protein
Raw token
HisKA:819:0.0000000000000106:886:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS02330
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1324 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS02330Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1324 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage324 / 1324 aa (24.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1324 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
933-1040 aa · 108 aa · 8.2% of protein
Raw token
HATPase_c:933:6.08e-31:1040:109:1093 Response_reg#3
1078-1188 aa · 111 aa · 8.4% of protein
Raw token
Response_reg:1078:9.45e-30:1188:112:1114 HTH_AraC#4
1285-1321 aa · 37 aa · 2.8% of protein
Raw token
HTH_AraC:1285:0.000000109:1321:37:42- Raw architecture: HisKA:819:0.0000000000000106:886:68:64#HATPase_c:933:6.08e-31:1040:109:109#Response_reg:1078:9.45e-30:1188:112:111#HTH_AraC:1285:0.000000109:1321:37:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000006.1::G00092
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46951-50925Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00512RefSeq proteinWP_007660253.1
Context group ID
GCF_000172175::NZ_ABJL02000006.1::G00092Context members
BACINT_RS02330
Partner locus tags
BACINT_RS02330
Partner old locus tags
BACINT_00512
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007660253.1Primary protein accession used for annex mappings.
UniProt accessionB3C6H6Primary UniProt accession resolved in the annex database.
UniProt IDB3C6H6_9BACEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS02330Primary locus identifier stored in the genes table.
Old locus tagBACINT_00512Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000006.1Sequence record reported by the local genomic context database.
Genomic interval46 951-50 925 nt3 975 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 951-50 925 ntGCF_000172175::NZ_ABJL02000006.1::G00092
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000006.1::G00092Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000006.1All displayed genes belong to this local TCS context.
Neighborhood span46 951-50 925 nt3 975 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 951 nt50 925 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS02330GCF_000172175#BACINT_RS02330
HKHybridCurrent focus
46 951-50 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS02330The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1810 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0112671
Simplified PFAM architecture for HKOC_0112671
PFAM domain coverage: 536 / 1324 aa (40.5%)
1 aa1324 aa
Reg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[34-57] | Reg_prop[124-142] | Reg_prop[302-324] | Reg_prop[396-417] | Reg_prop[530-552] | Y_Y_Y[702-765] | HisKA[820-885] | HATPase_c[933-1039] | Response_reg[1078-1187] | HTH_18[1243-1320]
- Domain count: 10
- Matched identifier: HKOC_0112671
- Positioned domains: Reg_prop 34-57 ; Reg_prop 124-142 ; Reg_prop 302-324 ; Reg_prop 396-417 ; Reg_prop 530-552 ; Y_Y_Y 702-765 ; HisKA 820-885 ; HATPase_c 933-1039 ; Response_reg 1078-1187 ; HTH_18 1243-1320
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS02330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key