Gene detail

BACINT_RS01660

Histidine kinase, Hybrid

Bacteroides intestinalis DSM 17393 · GCF_000172175

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength1428 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000172175#BACINT_RS01660Stable P2CS identifier used across views.

GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Selected clusterHKOC_0059781Run 6 · 2 sequences · id 100% · cov 80% · representative

External referencesWP_007660106.1 · B3C627 · MIST4 BACINT_RS01660RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_regHTH_AraC

Protein length1428 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage313 / 1428 aa (21.9%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1428 aa

Domain-by-domain annotation4 items

1 HisKA#1

907-969 aa · 63 aa · 4.4% of protein

Raw tokenHisKA:907:0.00000000000000307:969:63:64

2 HATPase_c#2

1020-1122 aa · 103 aa · 7.2% of protein

Raw tokenHATPase_c:1020:1.39e-24:1122:104:109

3 Response_reg#3

1173-1284 aa · 112 aa · 7.8% of protein

Raw tokenResponse_reg:1173:1.35e-29:1284:113:111

4 HTH_AraC#4

1384-1418 aa · 35 aa · 2.5% of protein

Raw tokenHTH_AraC:1384:0.000000504:1418:35:42

Raw architecture: HisKA:907:0.00000000000000307:969:63:64#HATPase_c:1020:1.39e-24:1122:104:109#Response_reg:1173:1.35e-29:1284:113:111#HTH_AraC:1384:0.000000504:1418:35:42
Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000172175::NZ_ABJL02000002.1::G00104

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span219360-223646Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBACINT_00361RefSeq proteinWP_007660106.1

Context group IDGCF_000172175::NZ_ABJL02000002.1::G00104

Context members

BACINT_RS01660

Partner locus tags

BACINT_RS01660

Partner old locus tags

BACINT_00361

Partner protein IDs

WP_007660106.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_007660106.1Primary protein accession used for annex mappings.

UniProt accessionB3C627Primary UniProt accession resolved in the annex database.

UniProt IDB3C627_9BACEDisplay identifier provided by UniProt.

GO / PubMed4 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005524 GO:0003700 GO:0000155 GO:0043565

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBACINT_RS01660Primary locus identifier stored in the genes table.

Old locus tagBACINT_00361Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_ABJL02000002.1Sequence record reported by the local genomic context database.

Genomic interval219 360-223 646 nt4 287 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span219 360-223 646 ntGCF_000172175::NZ_ABJL02000002.1::G00104

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000172175::NZ_ABJL02000002.1::G00104

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_ABJL02000002.1All displayed genes belong to this local TCS context.

Neighborhood span219 360-223 646 nt4 287 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

219 360 nt223 646 nt

+-BACINT_RS01660

Neighborhood gene cards

1 gene in the current local neighborhood.

BACINT_RS01660GCF_000172175#BACINT_RS01660

HKHybridCurrent focus

219 360-223 646 nt · Forward (+)

Old locus BACINT_00361RefSeq WP_007660106.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0059781HK

Run 62 sequencesid 100%cov 80%

PFAM Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18

Current gene is the representative sequence.

Selected clusterHKOC_0059781Run 6 · HK · 2 sequences

Representative sequenceGCF_000172175#BACINT_RS01660The current gene is the representative for this cluster.

PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1812 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0059781

Simplified PFAM architecture for HKOC_0059781

PFAM domain coverage: 580 / 1428 aa (40.6%)

1 aa1428 aa

Reg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18

Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
Raw architecture: Reg_prop[35-57] | Reg_prop[82-103] | Reg_prop[173-195] | Reg_prop[434-453] | Reg_prop[513-536] | Reg_prop[610-631] | Reg_prop[656-678] | Y_Y_Y[792-855] | HisKA[906-968] | HATPase_c[1018-1124] | Response_reg[1173-1282] | HTH_18[1340-1418]
Domain count: 12
Matched identifier: HKOC_0059781
Positioned domains: Reg_prop 35-57 ; Reg_prop 82-103 ; Reg_prop 173-195 ; Reg_prop 434-453 ; Reg_prop 513-536 ; Reg_prop 610-631 ; Reg_prop 656-678 ; Y_Y_Y 792-855 ; HisKA 906-968 ; HATPase_c 1018-1124 ; Response_reg 1173-1282 ; HTH_18 1340-1418

Cluster members and taxonomy

Representative gene: GCF_000172175#BACINT_RS01660

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175

AssemblyASM17217v1 · Contigreference genome · haploid

Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393

Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key