Gene detail

BACINT_RS01625

Histidine kinase, Hybrid

Bacteroides intestinalis DSM 17393 · GCF_000172175

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength1399 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000172175#BACINT_RS01625Stable P2CS identifier used across views.

GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Selected clusterHKOC_0068651Run 6 · 23 sequences · id 100% · cov 80% · representative

External referencesWP_007660092.1 · A0A3E4KYH7 · MIST4 BACINT_RS01625RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_cResponse_regHTH_AraC

Protein length1399 aaLength used to scale native and Biotite-like views.

Annotated domains44 with usable coordinates.

Domain coverage320 / 1399 aa (22.9%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1399 aa

Domain-by-domain annotation4 items

1 HisKA#1

869-932 aa · 64 aa · 4.6% of protein

Raw tokenHisKA:869:0.000000000000285:932:64:64

2 HATPase_c#2

979-1091 aa · 113 aa · 8.1% of protein

Raw tokenHATPase_c:979:5.74e-29:1091:113:109

3 Response_reg#3

1144-1253 aa · 110 aa · 7.9% of protein

Raw tokenResponse_reg:1144:4.53e-34:1253:111:111

4 HTH_AraC#4

1354-1386 aa · 33 aa · 2.4% of protein

Raw tokenHTH_AraC:1354:0.00000217:1386:33:42

Raw architecture: HisKA:869:0.000000000000285:932:64:64#HATPase_c:979:5.74e-29:1091:113:109#Response_reg:1144:4.53e-34:1253:111:111#HTH_AraC:1354:0.00000217:1386:33:42
Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000172175::NZ_ABJL02000002.1::G00103

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span204413-208612Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBACINT_00354RefSeq proteinWP_007660092.1

Context group IDGCF_000172175::NZ_ABJL02000002.1::G00103

Context members

BACINT_RS01625

Partner locus tags

BACINT_RS01625

Partner old locus tags

BACINT_00354

Partner protein IDs

WP_007660092.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_007660092.1Primary protein accession used for annex mappings.

UniProt accessionA0A3E4KYH7Primary UniProt accession resolved in the annex database.

UniProt IDA0A3E4KYH7_9BACEDisplay identifier provided by UniProt.

GO / PubMed4 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0005524 GO:0003700 GO:0000155 GO:0043565

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBACINT_RS01625Primary locus identifier stored in the genes table.

Old locus tagBACINT_00354Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_ABJL02000002.1Sequence record reported by the local genomic context database.

Genomic interval204 413-208 612 nt4 200 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span204 413-208 612 ntGCF_000172175::NZ_ABJL02000002.1::G00103

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000172175::NZ_ABJL02000002.1::G00103

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_ABJL02000002.1All displayed genes belong to this local TCS context.

Neighborhood span204 413-208 612 nt4 200 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

204 413 nt208 612 nt

+-BACINT_RS01625

Neighborhood gene cards

1 gene in the current local neighborhood.

BACINT_RS01625GCF_000172175#BACINT_RS01625

HKHybridCurrent focus

204 413-208 612 nt · Reverse (-)

Old locus BACINT_00354RefSeq WP_007660092.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0068651HK

Run 623 sequencesid 100%cov 80%

PFAM Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18

Current gene is the representative sequence.

Selected clusterHKOC_0068651Run 6 · HK · 23 sequences

Representative sequenceGCF_000172175#BACINT_RS01625The current gene is the representative for this cluster.

PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1812 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0068651

Simplified PFAM architecture for HKOC_0068651

PFAM domain coverage: 584 / 1399 aa (41.7%)

1 aa1399 aa

Reg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18

Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
Raw architecture: Reg_prop[45-67] | Reg_prop[90-111] | Reg_prop[178-200] | Reg_prop[371-390] | Reg_prop[471-491] | Reg_prop[565-586] | Reg_prop[608-630] | Y_Y_Y[751-815] | HisKA[869-932] | HATPase_c[979-1090] | Response_reg[1144-1253] | HTH_18[1311-1389]
Domain count: 12
Matched identifier: HKOC_0068651
Positioned domains: Reg_prop 45-67 ; Reg_prop 90-111 ; Reg_prop 178-200 ; Reg_prop 371-390 ; Reg_prop 471-491 ; Reg_prop 565-586 ; Reg_prop 608-630 ; Y_Y_Y 751-815 ; HisKA 869-932 ; HATPase_c 979-1090 ; Response_reg 1144-1253 ; HTH_18 1311-1389

Cluster members and taxonomy

Representative gene: GCF_000172175#BACINT_RS01625

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175

AssemblyASM17217v1 · Contigreference genome · haploid

Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393

Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides

Lineage path7 lineage nodes

1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key