1 HisKA#1
284-350 aa · 67 aa · 13.1% of protein
Raw token
HisKA:284:0.00000000000179:350:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS01450
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength513 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172175#BACINT_RS01450Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 513 aa (35.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
398-510 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:398:1.13e-29:510:113:109- Raw architecture: HisKA:284:0.00000000000179:350:67:64#HATPase_c:398:1.13e-29:510:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172175::NZ_ABJL02000002.1::G00100
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127097-129344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00318RefSeq proteinWP_007660040.1
Context group ID
GCF_000172175::NZ_ABJL02000002.1::G00100Context members
BACINT_RS01445BACINT_RS01450
Partner locus tags
BACINT_RS01445BACINT_RS01450
Partner old locus tags
BACINT_00317BACINT_00318
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007660040.1Primary protein accession used for annex mappings.
UniProt accessionB3C5Y4Primary UniProt accession resolved in the annex database.
UniProt IDB3C5Y4_9BACEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS01450Primary locus identifier stored in the genes table.
Old locus tagBACINT_00318Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000002.1Sequence record reported by the local genomic context database.
Genomic interval127 803-129 344 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span127 097-129 344 ntGCF_000172175::NZ_ABJL02000002.1::G00100
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000002.1::G00100Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000002.1All displayed genes belong to this local TCS context.
Neighborhood span127 097-129 344 nt2 248 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 097 nt129 344 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACINT_RS01445GCF_000172175#BACINT_RS01445
RROmpR
127 097-127 798 nt · Reverse (-)
BACINT_RS01450GCF_000172175#BACINT_RS01450
HKClassicCurrent focus
127 803-129 344 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS01450The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1414881
Simplified PFAM architecture for HKOC_1414881
PFAM domain coverage: 179 / 513 aa (34.9%)
1 aa513 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[284-350] | HATPase_c[399-510]
- Domain count: 2
- Matched identifier: HKOC_1414881
- Positioned domains: HisKA 284-350 ; HATPase_c 399-510
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS01450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key