1 HisKA#1
811-873 aa · 63 aa · 4.7% of protein
Raw token
HisKA:811:0.00000000000158:873:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS01120
Histidine kinase, Hybrid
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeHybridLength1351 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000172175#BACINT_RS01120Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1351 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage331 / 1351 aa (24.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1351 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
920-1048 aa · 129 aa · 9.5% of protein
Raw token
HATPase_c:920:5.08e-23:1048:129:1093 Response_reg#3
1100-1203 aa · 104 aa · 7.7% of protein
Raw token
Response_reg:1100:3.01e-30:1203:105:1114 HTH_AraC#4
1308-1342 aa · 35 aa · 2.6% of protein
Raw token
HTH_AraC:1308:0.00000806:1342:35:42- Raw architecture: HisKA:811:0.00000000000158:873:65:64#HATPase_c:920:5.08e-23:1048:129:109#Response_reg:1100:3.01e-30:1203:105:111#HTH_AraC:1308:0.00000806:1342:35:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000172175::NZ_ABJL02000002.1::G00099
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40480-44535Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000172175::NZ_ABJL02000002.1::G00099Context members
BACINT_RS01120
Partner locus tags
BACINT_RS01120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044154589.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS01120Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_ABJL02000002.1Sequence record reported by the local genomic context database.
Genomic interval40 480-44 535 nt4 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 480-44 535 ntGCF_000172175::NZ_ABJL02000002.1::G00099
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000002.1::G00099Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000002.1All displayed genes belong to this local TCS context.
Neighborhood span40 480-44 535 nt4 056 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 480 nt44 535 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BACINT_RS01120GCF_000172175#BACINT_RS01120
HKHybridCurrent focus
40 480-44 535 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172175#BACINT_RS01120The current gene is the representative for this cluster.
PFAM architectureReg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_186 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0093217
Simplified PFAM architecture for HKOC_0093217
PFAM domain coverage: 460 / 1351 aa (34.0%)
1 aa1351 aa
Reg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[295-317] | Y_Y_Y[695-754] | HisKA[812-873] | HATPase_c[921-1048] | Response_reg[1100-1208] | HTH_18[1266-1343]
- Domain count: 6
- Matched identifier: HKOC_0093217
- Positioned domains: Reg_prop 295-317 ; Y_Y_Y 695-754 ; HisKA 812-873 ; HATPase_c 921-1048 ; Response_reg 1100-1208 ; HTH_18 1266-1343
Cluster members and taxonomy
Representative gene: GCF_000172175#BACINT_RS01120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key