1 TPR_1#1
228-254 aa · 27 aa · 4.1% of protein
Raw token
TPR_1:228:0.0000109:254:27:34P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BACINT_RS00940
Histidine kinase, Classic
Bacteroides intestinalis DSM 17393 · GCF_000172175
ClassHKTypeClassicLength662 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172175#BACINT_RS00940Stable P2CS identifier used across views.
GenomeGCF_000172175Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
TPR_1His_kinaseHATPase_c
Protein length662 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 662 aa (29.6%)Merged over positioned domains only.
Domain description1 TPR_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa662 aa
Domain-by-domain annotation3 items
2 His_kinase#2
459-528 aa · 70 aa · 10.6% of protein
Raw token
His_kinase:459:1.13e-16:528:74:803 HATPase_c#3
556-654 aa · 99 aa · 15.0% of protein
Raw token
HATPase_c:556:0.0000000118:654:113:109- Raw architecture: TPR_1:228:0.0000109:254:27:34#His_kinase:459:1.13e-16:528:74:80#HATPase_c:556:0.0000000118:654:113:109
- Domain description: 1 TPR_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172175::NZ_ABJL02000001.1::G00108
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span254479-257347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBACINT_00203RefSeq proteinWP_374937535.1
Context group ID
GCF_000172175::NZ_ABJL02000001.1::G00108Context members
BACINT_RS00940BACINT_RS00945
Partner locus tags
BACINT_RS00940BACINT_RS00945
Partner old locus tags
BACINT_00203BACINT_00204
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_374937535.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBACINT_RS00940Primary locus identifier stored in the genes table.
Old locus tagBACINT_00203Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABJL02000001.1Sequence record reported by the local genomic context database.
Genomic interval254 479-256 467 nt1 989 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span254 479-257 347 ntGCF_000172175::NZ_ABJL02000001.1::G00108
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172175::NZ_ABJL02000001.1::G00108Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABJL02000001.1All displayed genes belong to this local TCS context.
Neighborhood span254 479-257 347 nt2 869 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
254 479 nt257 347 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BACINT_RS00940GCF_000172175#BACINT_RS00940
HKClassicCurrent focus
254 479-256 467 nt · Forward (+)
BACINT_RS00945GCF_000172175#BACINT_RS00945
RRLytTR
256 595-257 347 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003363675#DXK01_RS00525Use this link to inspect the representative gene detail.
PFAM architectureTPR_8 + TPR_2 + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0825579
Simplified PFAM architecture for HKOC_0825579
PFAM domain coverage: 221 / 677 aa (32.6%)
1 aa677 aa
TPR_8TPR_2His_kinaseHATPase_c
- Simplified architecture: TPR_8 + TPR_2 + His_kinase + HATPase_c
- Raw architecture: TPR_8[122-149] | TPR_2[242-269] | His_kinase[475-544] | HATPase_c[576-670]
- Domain count: 4
- Matched identifier: HKOC_0825579
- Positioned domains: TPR_8 122-149 ; TPR_2 242-269 ; His_kinase 475-544 ; HATPase_c 576-670
Cluster members and taxonomy
Representative gene: GCF_003363675#DXK01_RS00525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 870 · GCF_000172175
AssemblyASM17217v1 · Contigreference genome · haploid
Genome composition6 052 596 bp · 43,0% GCBacteroides intestinalis DSM 17393
Signal transduction countsGenes 133 · HK 99 · RR 26CheA 0 · PP 8
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key