1 GAF#1
46-182 aa · 137 aa · 16.1% of protein
Raw token
GAF:46:0.0000331:182:137:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS09475
Histidine kinase, Hybrid
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeHybridLength853 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000169235#DORFOR_RS09475Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length853 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage438 / 853 aa (51.3%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa853 aa
Domain-by-domain annotation4 items
2 HisKA#2
477-542 aa · 66 aa · 7.7% of protein
Raw token
HisKA:477:0.0000000000000053:542:66:643 HATPase_c#3
591-708 aa · 118 aa · 13.8% of protein
Raw token
HATPase_c:591:2.01e-28:708:118:1094 Response_reg#4
731-847 aa · 117 aa · 13.7% of protein
Raw token
Response_reg:731:7.52e-33:847:117:111- Raw architecture: GAF:46:0.0000331:182:137:133#HisKA:477:0.0000000000000053:542:66:64#HATPase_c:591:2.01e-28:708:118:109#Response_reg:731:7.52e-33:847:117:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000169235::NZ_AAXA02000014.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span267952-270513Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_02045RefSeq proteinWP_154104229.1
Context group ID
GCF_000169235::NZ_AAXA02000014.1::G00024Context members
DORFOR_RS09475
Partner locus tags
DORFOR_RS09475
Partner old locus tags
DORFOR_02045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_154104229.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS09475Primary locus identifier stored in the genes table.
Old locus tagDORFOR_02045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000014.1Sequence record reported by the local genomic context database.
Genomic interval267 952-270 513 nt2 562 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span267 952-270 513 ntGCF_000169235::NZ_AAXA02000014.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000014.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000014.1All displayed genes belong to this local TCS context.
Neighborhood span267 952-270 513 nt2 562 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 952 nt270 513 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORFOR_RS09475GCF_000169235#DORFOR_RS09475
HKHybridCurrent focus
267 952-270 513 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS09475The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0483167
Simplified PFAM architecture for HKOC_0483167
PFAM domain coverage: 297 / 853 aa (34.8%)
1 aa853 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[477-542] | HATPase_c[594-707] | Response_reg[731-847]
- Domain count: 3
- Matched identifier: HKOC_0483167
- Positioned domains: HisKA 477-542 ; HATPase_c 594-707 ; Response_reg 731-847
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS09475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key