1 Response_reg#1
6-114 aa · 109 aa · 20.4% of protein
Raw token
Response_reg:6:2.8e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS09290
Response regulator, unclassified
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169235#DORFOR_RS09290Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage175 / 534 aa (32.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-479 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:444:0.00000000168:479:36:423 HTH_AraC#3
500-529 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:500:0.0000000489:529:30:42- Raw architecture: Response_reg:6:2.8e-26:114:109:111#HTH_AraC:444:0.00000000168:479:36:42#HTH_AraC:500:0.0000000489:529:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169235::NZ_AAXA02000014.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231576-235024Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_02006RefSeq proteinWP_005333645.1
Context group ID
GCF_000169235::NZ_AAXA02000014.1::G00023Context members
DORFOR_RS09290DORFOR_RS09295
Partner locus tags
DORFOR_RS09290DORFOR_RS09295
Partner old locus tags
DORFOR_02006DORFOR_02007
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333645.1Primary protein accession used for annex mappings.
UniProt accessionB0G6M2Primary UniProt accession resolved in the annex database.
UniProt IDB0G6M2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS09290Primary locus identifier stored in the genes table.
Old locus tagDORFOR_02006Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000014.1Sequence record reported by the local genomic context database.
Genomic interval231 576-233 180 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span231 576-235 024 ntGCF_000169235::NZ_AAXA02000014.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000014.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000014.1All displayed genes belong to this local TCS context.
Neighborhood span231 576-235 024 nt3 449 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 576 nt235 024 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORFOR_RS09290GCF_000169235#DORFOR_RS09290
RRunclassifiedCurrent focus
231 576-233 180 nt · Forward (+)
DORFOR_RS09295GCF_000169235#DORFOR_RS09295
HKClassic
233 186-235 024 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS09290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0102887
Simplified PFAM architecture for RROC_0102887
PFAM domain coverage: 321 / 534 aa (60.1%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-116] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0102887
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS09290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key