1 Response_reg#1
3-110 aa · 108 aa · 39.7% of protein
Raw token
Response_reg:3:3.22e-18:110:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS07775
Response regulator, unclassified
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeunclassifiedLength272 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169235#DORFOR_RS07775Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 272 aa (39.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:3.22e-18:110:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169235::NZ_AAXA02000013.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span267769-269933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_01677RefSeq proteinWP_005332989.1
Context group ID
GCF_000169235::NZ_AAXA02000013.1::G00026Context members
DORFOR_RS07775DORFOR_RS15615
Partner locus tags
DORFOR_RS07775DORFOR_RS15615
Partner old locus tags
DORFOR_01677
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005332989.1Primary protein accession used for annex mappings.
UniProt accessionB0G5Y6Primary UniProt accession resolved in the annex database.
UniProt IDB0G5Y6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS07775Primary locus identifier stored in the genes table.
Old locus tagDORFOR_01677Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000013.1Sequence record reported by the local genomic context database.
Genomic interval267 769-268 587 nt819 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span267 769-269 933 ntGCF_000169235::NZ_AAXA02000013.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000013.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000013.1All displayed genes belong to this local TCS context.
Neighborhood span267 769-269 933 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 769 nt269 933 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORFOR_RS07775GCF_000169235#DORFOR_RS07775
RRunclassifiedCurrent focus
267 769-268 587 nt · Reverse (-)
DORFOR_RS15615GCF_000169235#DORFOR_RS15615
HKClassic
268 584-269 933 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS07775The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0609874
Simplified PFAM architecture for RROC_0609874
PFAM domain coverage: 108 / 272 aa (39.7%)
1 aa272 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-110]
- Domain count: 1
- Matched identifier: RROC_0609874
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS07775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key