1 SBP_bac_3#1
66-263 aa · 198 aa · 20.9% of protein
Raw token
SBP_bac_3:66:4.42e-27:263:209:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS06380
Histidine kinase, Hybrid
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeHybridLength946 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000169235#DORFOR_RS06380Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
SBP_bac_3PBPbHisKAHATPase_cResponse_reg
Protein length946 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage702 / 946 aa (74.2%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa946 aa
Domain-by-domain annotation5 items
2 PBPb#2
286-491 aa · 206 aa · 21.8% of protein
Raw token
PBPb:286:2.66e-19:491:216:2193 HisKA#3
569-635 aa · 67 aa · 7.1% of protein
Raw token
HisKA:569:3.42e-19:635:67:644 HATPase_c#4
683-796 aa · 114 aa · 12.1% of protein
Raw token
HATPase_c:683:8.68e-30:796:114:1095 Response_reg#5
826-942 aa · 117 aa · 12.4% of protein
Raw token
Response_reg:826:1.37e-33:942:117:111- Raw architecture: SBP_bac_3:66:4.42e-27:263:209:224#PBPb:286:2.66e-19:491:216:219#HisKA:569:3.42e-19:635:67:64#HATPase_c:683:8.68e-30:796:114:109#Response_reg:826:1.37e-33:942:117:111
- Domain description: 1 SBP_bac_3,1 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000169235::NZ_AAXA02000012.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span161178-164018Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_01382RefSeq proteinWP_005332439.1
Context group ID
GCF_000169235::NZ_AAXA02000012.1::G00029Context members
DORFOR_RS06380
Partner locus tags
DORFOR_RS06380
Partner old locus tags
DORFOR_01382
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005332439.1Primary protein accession used for annex mappings.
UniProt accessionB0G542Primary UniProt accession resolved in the annex database.
UniProt IDB0G542_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS06380Primary locus identifier stored in the genes table.
Old locus tagDORFOR_01382Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000012.1Sequence record reported by the local genomic context database.
Genomic interval161 178-164 018 nt2 841 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span161 178-164 018 ntGCF_000169235::NZ_AAXA02000012.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000012.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000012.1All displayed genes belong to this local TCS context.
Neighborhood span161 178-164 018 nt2 841 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 178 nt164 018 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORFOR_RS06380GCF_000169235#DORFOR_RS06380
HKHybridCurrent focus
161 178-164 018 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS06380The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0333749
Simplified PFAM architecture for HKOC_0333749
PFAM domain coverage: 502 / 946 aa (53.1%)
1 aa946 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[60-263] | HisKA[570-635] | HATPase_c[683-797] | Response_reg[826-942]
- Domain count: 4
- Matched identifier: HKOC_0333749
- Positioned domains: SBP_bac_3 60-263 ; HisKA 570-635 ; HATPase_c 683-797 ; Response_reg 826-942
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS06380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key