1 HAMP#1
184-254 aa · 71 aa · 14.3% of protein
Raw token
HAMP:184:0.000000000000487:254:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS05000
Histidine kinase, Classic
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169235#DORFOR_RS05000Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 498 aa (50.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-332 aa · 68 aa · 13.7% of protein
Raw token
HisKA:265:0.00000000000000655:332:68:643 HATPase_c#3
379-492 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:379:6.78e-32:492:114:109- Raw architecture: HAMP:184:0.000000000000487:254:71:69#HisKA:265:0.00000000000000655:332:68:64#HATPase_c:379:6.78e-32:492:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169235::NZ_AAXA02000011.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107663-109841Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_01078RefSeq proteinWP_005331919.1
Context group ID
GCF_000169235::NZ_AAXA02000011.1::G00032Context members
DORFOR_RS05000DORFOR_RS05005
Partner locus tags
DORFOR_RS05000DORFOR_RS05005
Partner old locus tags
DORFOR_01078DORFOR_01079
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005331919.1Primary protein accession used for annex mappings.
UniProt accessionB0G499Primary UniProt accession resolved in the annex database.
UniProt IDB0G499_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS05000Primary locus identifier stored in the genes table.
Old locus tagDORFOR_01078Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000011.1Sequence record reported by the local genomic context database.
Genomic interval107 663-109 159 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span107 663-109 841 ntGCF_000169235::NZ_AAXA02000011.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000011.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000011.1All displayed genes belong to this local TCS context.
Neighborhood span107 663-109 841 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 663 nt109 841 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORFOR_RS05000GCF_000169235#DORFOR_RS05000
HKClassicCurrent focus
107 663-109 159 nt · Forward (+)
DORFOR_RS05005GCF_000169235#DORFOR_RS05005
RROmpR
109 152-109 841 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS05000The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487062
Simplified PFAM architecture for HKOC_1487062
PFAM domain coverage: 228 / 498 aa (45.8%)
1 aa498 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[202-253] | HisKA[267-331] | HATPase_c[380-490]
- Domain count: 3
- Matched identifier: HKOC_1487062
- Positioned domains: HAMP 202-253 ; HisKA 267-331 ; HATPase_c 380-490
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS05000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key