1 Response_reg#1
3-103 aa · 101 aa · 48.8% of protein
Raw token
Response_reg:3:6.61e-27:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS03680
Response regulator NarL family
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeNarLLength207 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169235#DORFOR_RS03680Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 207 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.6% of protein
Raw token
HTH_LUXR:149:1.35e-20:201:53:58- Raw architecture: Response_reg:3:6.61e-27:103:101:111#HTH_LUXR:149:1.35e-20:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169235::NZ_AAXA02000010.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41998-43741Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_00800RefSeq proteinWP_005331505.1
Context group ID
GCF_000169235::NZ_AAXA02000010.1::G00033Context members
DORFOR_RS03680DORFOR_RS03685
Partner locus tags
DORFOR_RS03680DORFOR_RS03685
Partner old locus tags
DORFOR_00800DORFOR_00801
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005331505.1Primary protein accession used for annex mappings.
UniProt accessionB0G3H5Primary UniProt accession resolved in the annex database.
UniProt IDB0G3H5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS03680Primary locus identifier stored in the genes table.
Old locus tagDORFOR_00800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000010.1Sequence record reported by the local genomic context database.
Genomic interval41 998-42 621 nt624 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 998-43 741 ntGCF_000169235::NZ_AAXA02000010.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000010.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000010.1All displayed genes belong to this local TCS context.
Neighborhood span41 998-43 741 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 998 nt43 741 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORFOR_RS03680GCF_000169235#DORFOR_RS03680
RRNarLCurrent focus
41 998-42 621 nt · Reverse (-)
DORFOR_RS03685GCF_000169235#DORFOR_RS03685
HKClassic
42 623-43 741 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS03680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2071076
Simplified PFAM architecture for RROC_2071076
PFAM domain coverage: 155 / 207 aa (74.9%)
1 aa207 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2071076
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS03680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key