1 Response_reg#1
6-118 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:6:1.32e-19:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS01565
Response regulator LytTR family
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000169235#DORFOR_RS01565Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 238 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-229 aa · 86 aa · 36.1% of protein
Raw token
LytTR:144:2.87e-17:229:91:98- Raw architecture: Response_reg:6:1.32e-19:118:115:111#LytTR:144:2.87e-17:229:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000169235::NZ_AAXA02000007.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16695-17411Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_00345RefSeq proteinWP_227275493.1
Context group ID
GCF_000169235::NZ_AAXA02000007.1::G00040Context members
DORFOR_RS01565
Partner locus tags
DORFOR_RS01565
Partner old locus tags
DORFOR_00345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227275493.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS01565Primary locus identifier stored in the genes table.
Old locus tagDORFOR_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000007.1Sequence record reported by the local genomic context database.
Genomic interval16 695-17 411 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 695-17 411 ntGCF_000169235::NZ_AAXA02000007.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000007.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000007.1All displayed genes belong to this local TCS context.
Neighborhood span16 695-17 411 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 695 nt17 411 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORFOR_RS01565GCF_000169235#DORFOR_RS01565
RRLytTRCurrent focus
16 695-17 411 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS01565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932670
Simplified PFAM architecture for RROC_0932670
PFAM domain coverage: 200 / 238 aa (84.0%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-117] | LytTR[142-229]
- Domain count: 2
- Matched identifier: RROC_0932670
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; LytTR 142-229 ; LytTR 142-229
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS01565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key