1 PAS#1
98-194 aa · 97 aa · 22.5% of protein
Raw token
PAS:98:0.00000000000247:194:113:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ESG_RS0107235
Histidine kinase, Classic
Escherichia coli TW11681 · GCF_000166595
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000166595#ESG_RS0107235Stable P2CS identifier used across views.
GenomeGCF_000166595Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage275 / 431 aa (63.8%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation3 items
2 HisKA#2
203-268 aa · 66 aa · 15.3% of protein
Raw token
HisKA:203:5.58e-20:268:66:643 HATPase_c#3
313-424 aa · 112 aa · 26.0% of protein
Raw token
HATPase_c:313:4.42e-33:424:112:109- Raw architecture: PAS:98:0.00000000000247:194:113:113#HisKA:203:5.58e-20:268:66:64#HATPase_c:313:4.42e-33:424:112:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000166595::NZ_AELD01000012.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span268533-270575Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000166595::NZ_AELD01000012.1::G00033Context members
ESG_RS0107235ESG_RS0107240
Partner locus tags
ESG_RS0107235ESG_RS0107240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000893580.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V3W2Z6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V3W2Z6_ECOLXDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagESG_RS0107235Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AELD01000012.1Sequence record reported by the local genomic context database.
Genomic interval268 533-269 828 nt1 296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span268 533-270 575 ntGCF_000166595::NZ_AELD01000012.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166595::NZ_AELD01000012.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AELD01000012.1All displayed genes belong to this local TCS context.
Neighborhood span268 533-270 575 nt2 043 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
268 533 nt270 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ESG_RS0107235GCF_000166595#ESG_RS0107235
HKClassicCurrent focus
268 533-269 828 nt · Reverse (-)
ESG_RS0107240GCF_000166595#ESG_RS0107240
RROmpR
269 886-270 575 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009565#B21_RS01825Use this link to inspect the representative gene detail.
PFAM architecturePhoR + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2161294
Simplified PFAM architecture for HKOC_2161294
PFAM domain coverage: 360 / 431 aa (83.5%)
1 aa431 aa
PhoRPASHisKAHATPase_c
- Simplified architecture: PhoR + PAS + HisKA + HATPase_c
- Raw architecture: PhoR[6-91] | PAS[99-194] | HisKA[203-268] | HATPase_c[313-424]
- Domain count: 4
- Matched identifier: HKOC_2161294
- Positioned domains: PhoR 6-91 ; PAS 99-194 ; HisKA 203-268 ; HATPase_c 313-424
Cluster members and taxonomy
Representative gene: GCF_000009565#B21_RS01825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 913 088 · GCF_000166595
AssemblyASM16659v2 · Contighaploid
Genome composition5 305 843 bp · 50,5% GCEscherichia coli TW11681
Signal transduction countsGenes 68 · HK 32 · RR 35CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key