1 Response_reg#1
3-106 aa · 104 aa · 45.2% of protein
Raw token
Response_reg:3:1.45e-22:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBIF_RS04015
Response regulator NarL family
Bifidobacterium bifidum S17 · GCF_000164965
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164965#BBIF_RS04015Stable P2CS identifier used across views.
GenomeGCF_000164965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 230 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-223 aa · 56 aa · 24.3% of protein
Raw token
HTH_LUXR:168:7.91e-19:223:56:58- Raw architecture: Response_reg:3:1.45e-22:106:104:111#HTH_LUXR:168:7.91e-19:223:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164965::NC_014616.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span982755-984727Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBIF_0801RefSeq proteinWP_003817355.1
Context group ID
GCF_000164965::NC_014616.1::G00007Context members
BBIF_RS04015BBIF_RS04020
Partner locus tags
BBIF_RS04015BBIF_RS04020
Partner old locus tags
BBIF_0801BBIF_0802
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003817355.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBIF_RS04015Primary locus identifier stored in the genes table.
Old locus tagBBIF_0801Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014616.1Sequence record reported by the local genomic context database.
Genomic interval982 755-983 447 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span982 755-984 727 ntGCF_000164965::NC_014616.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164965::NC_014616.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014616.1All displayed genes belong to this local TCS context.
Neighborhood span982 755-984 727 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
982 755 nt984 727 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBIF_RS04015GCF_000164965#BBIF_RS04015
RRNarLCurrent focus
982 755-983 447 nt · Reverse (-)
BBIF_RS04020GCF_000164965#BBIF_RS04020
HKClassic
983 444-984 727 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164965#BBIF_RS04015The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200290
Simplified PFAM architecture for RROC_1200290
PFAM domain coverage: 159 / 230 aa (69.1%)
1 aa230 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1200290
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 170-223 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_000164965#BBIF_RS04015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 883 062 · GCF_000164965
AssemblyASM16496v1 · Complete Genomehaploid
Genome composition2 186 882 bp · 63,0% GCBifidobacterium bifidum S17
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key