1 Response_reg#1
14-122 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:14:0.0000000000000239:122:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBIF_RS04215
Response regulator NarL family
Bifidobacterium bifidum S17 · GCF_000164965
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164965#BBIF_RS04215Stable P2CS identifier used across views.
GenomeGCF_000164965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 226 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-212 aa · 57 aa · 25.2% of protein
Raw token
HTH_LUXR:156:4.64e-16:212:57:58- Raw architecture: Response_reg:14:0.0000000000000239:122:110:111#HTH_LUXR:156:4.64e-16:212:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164965::NC_014616.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1021996-1022676Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBIF_0840RefSeq proteinWP_003816947.1
Context group ID
GCF_000164965::NC_014616.1::G00008Context members
BBIF_RS04215
Partner locus tags
BBIF_RS04215
Partner old locus tags
BBIF_0840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003816947.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3ECA1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3ECA1_BIFBPDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBIF_RS04215Primary locus identifier stored in the genes table.
Old locus tagBBIF_0840Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014616.1Sequence record reported by the local genomic context database.
Genomic interval1 021 996-1 022 676 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 021 996-1 022 676 ntGCF_000164965::NC_014616.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164965::NC_014616.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014616.1All displayed genes belong to this local TCS context.
Neighborhood span1 021 996-1 022 676 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 021 996 nt1 022 676 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBIF_RS04215GCF_000164965#BBIF_RS04215
RRNarLCurrent focus
1 021 996-1 022 676 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040927425#AB5808_RS02120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0685899
Simplified PFAM architecture for RROC_0685899
PFAM domain coverage: 162 / 255 aa (63.5%)
1 aa255 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[42-151] | GerE[189-240]
- Domain count: 2
- Matched identifier: RROC_0685899
- Positioned domains: Response_reg 42-151 ; GerE 189-240
Cluster members and taxonomy
Representative gene: GCF_040927425#AB5808_RS02120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 883 062 · GCF_000164965
AssemblyASM16496v1 · Complete Genomehaploid
Genome composition2 186 882 bp · 63,0% GCBifidobacterium bifidum S17
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key