1 Response_reg#1
4-80 aa · 77 aa · 45.6% of protein
Raw token
Response_reg:4:0.00000000138:80:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBIF_RS03440
Response regulator NarL family
Bifidobacterium bifidum S17 · GCF_000164965
ClassRRTypeNarLLength169 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164965#BBIF_RS03440Stable P2CS identifier used across views.
GenomeGCF_000164965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length169 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage132 / 169 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa169 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
109-163 aa · 55 aa · 32.5% of protein
Raw token
HTH_LUXR:109:5.81e-16:163:55:58- Raw architecture: Response_reg:4:0.00000000138:80:77:111#HTH_LUXR:109:5.81e-16:163:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164965::NC_014616.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span840809-841318Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBIF_0688RefSeq proteinWP_041775354.1
Context group ID
GCF_000164965::NC_014616.1::G00003Context members
BBIF_RS03440
Partner locus tags
BBIF_RS03440
Partner old locus tags
BBIF_0688
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041775354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBIF_RS03440Primary locus identifier stored in the genes table.
Old locus tagBBIF_0688Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014616.1Sequence record reported by the local genomic context database.
Genomic interval840 809-841 318 nt510 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span840 809-841 318 ntGCF_000164965::NC_014616.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164965::NC_014616.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014616.1All displayed genes belong to this local TCS context.
Neighborhood span840 809-841 318 nt510 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
840 809 nt841 318 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBIF_RS03440GCF_000164965#BBIF_RS03440
RRNarLCurrent focus
840 809-841 318 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164965#BBIF_RS03440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2198651
Simplified PFAM architecture for RROC_2198651
PFAM domain coverage: 130 / 169 aa (76.9%)
1 aa169 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-79] | GerE[110-164]
- Domain count: 2
- Matched identifier: RROC_2198651
- Positioned domains: Response_reg 5-79 ; Response_reg 5-79 ; GerE 110-164 ; GerE 110-164
Cluster members and taxonomy
Representative gene: GCF_000164965#BBIF_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 883 062 · GCF_000164965
AssemblyASM16496v1 · Complete Genomehaploid
Genome composition2 186 882 bp · 63,0% GCBifidobacterium bifidum S17
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key