1 Response_reg#1
44-154 aa · 111 aa · 43.0% of protein
Raw token
Response_reg:44:4.43e-30:154:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBIF_RS03900
Response regulator, AmiR_NasR family
Bifidobacterium bifidum S17 · GCF_000164965
ClassRRTypeAmiR_NasRLength258 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164965#BBIF_RS03900Stable P2CS identifier used across views.
GenomeGCF_000164965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length258 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 258 aa (62.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa258 aa
Domain-by-domain annotation2 items
2 ANTAR#2
197-245 aa · 49 aa · 19.0% of protein
Raw token
ANTAR:197:1.41e-16:245:49:49- Raw architecture: Response_reg:44:4.43e-30:154:112:111#ANTAR:197:1.41e-16:245:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164965::NC_014616.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span953320-954096Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBIF_0779RefSeq proteinWP_003812733.1
Context group ID
GCF_000164965::NC_014616.1::G00006Context members
BBIF_RS03900
Partner locus tags
BBIF_RS03900
Partner old locus tags
BBIF_0779
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003812733.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3E9P2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3E9P2_BIFBPDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBIF_RS03900Primary locus identifier stored in the genes table.
Old locus tagBBIF_0779Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014616.1Sequence record reported by the local genomic context database.
Genomic interval953 320-954 096 nt777 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span953 320-954 096 ntGCF_000164965::NC_014616.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164965::NC_014616.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014616.1All displayed genes belong to this local TCS context.
Neighborhood span953 320-954 096 nt777 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
953 320 nt954 096 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBIF_RS03900GCF_000164965#BBIF_RS03900
RRAmiR_NasRCurrent focus
953 320-954 096 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS03305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0662258
Simplified PFAM architecture for RROC_0662258
PFAM domain coverage: 163 / 258 aa (63.2%)
1 aa258 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[44-153] | ANTAR[193-245]
- Domain count: 2
- Matched identifier: RROC_0662258
- Positioned domains: Response_reg 44-153 ; Response_reg 44-153 ; ANTAR 193-245 ; ANTAR 193-245
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS03305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 883 062 · GCF_000164965
AssemblyASM16496v1 · Complete Genomehaploid
Genome composition2 186 882 bp · 63,0% GCBifidobacterium bifidum S17
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key