1 Response_reg#1
3-113 aa · 111 aa · 50.7% of protein
Raw token
Response_reg:3:1.73e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9541_RS04970
Response regulator OmpR family
Escherichia coli MS 116-1 · GCF_000164475
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164475#HMPREF9541_RS04970Stable P2CS identifier used across views.
GenomeGCF_000164475Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.9% of protein
Raw token
Trans_reg_C:145:3.5e-28:216:77:77- Raw architecture: Response_reg:3:1.73e-28:113:111:111#Trans_reg_C:145:3.5e-28:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164475::NZ_GG773471.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79799-81804Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9541_04113RefSeq proteinWP_001221493.1
Context group ID
GCF_000164475::NZ_GG773471.1::G00013Context members
HMPREF9541_RS04975HMPREF9541_RS04970
Partner locus tags
HMPREF9541_RS04975HMPREF9541_RS04970
Partner old locus tags
HMPREF9541_04112HMPREF9541_04113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001221493.1Primary protein accession used for annex mappings.
UniProt accessionD3GVS9Primary UniProt accession resolved in the annex database.
UniProt IDD3GVS9_ECO44Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9541_RS04970Primary locus identifier stored in the genes table.
Old locus tagHMPREF9541_04113Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG773471.1Sequence record reported by the local genomic context database.
Genomic interval81 145-81 804 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 799-81 804 ntGCF_000164475::NZ_GG773471.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164475::NZ_GG773471.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG773471.1All displayed genes belong to this local TCS context.
Neighborhood span79 799-81 804 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 799 nt81 804 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9541_RS04975GCF_000164475#HMPREF9541_RS04975
HKClassic
79 799-81 148 nt · Reverse (-)
HMPREF9541_RS04970GCF_000164475#HMPREF9541_RS04970
RROmpRCurrent focus
81 145-81 804 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009565#B21_RS15075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767227
Simplified PFAM architecture for RROC_1767227
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1767227
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000009565#B21_RS15075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 538 · GCF_000164475
AssemblyASM16447v1 · Scaffoldhaploid
Genome composition4 863 660 bp · 50,5% GCEscherichia coli MS 116-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key