1 Response_reg#1
4-114 aa · 111 aa · 45.1% of protein
Raw token
Response_reg:4:3.85e-27:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0007_RS25175
Response regulator LytTR family
Bacillus mycoides · GCF_000160975
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160975#BCERE0007_RS25175Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 246 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-244 aa · 97 aa · 39.4% of protein
Raw token
LytTR:148:5.81e-37:244:97:98- Raw architecture: Response_reg:4:3.85e-27:114:113:111#LytTR:148:5.81e-37:244:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160975::NZ_CM000719.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4953416-4955903Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0007_50770RefSeq proteinWP_002159687.1
Context group ID
GCF_000160975::NZ_CM000719.1::G00066Context members
BCERE0007_RS25175BCERE0007_RS25180
Partner locus tags
BCERE0007_RS25175BCERE0007_RS25180
Partner old locus tags
bcere0007_50770bcere0007_50780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002159687.1Primary protein accession used for annex mappings.
UniProt accessionJ8FJP2Primary UniProt accession resolved in the annex database.
UniProt IDJ8FJP2_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0007_RS25175Primary locus identifier stored in the genes table.
Old locus tagbcere0007_50770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000719.1Sequence record reported by the local genomic context database.
Genomic interval4 953 416-4 954 156 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 953 416-4 955 903 ntGCF_000160975::NZ_CM000719.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160975::NZ_CM000719.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000719.1All displayed genes belong to this local TCS context.
Neighborhood span4 953 416-4 955 903 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 953 416 nt4 955 903 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0007_RS25175GCF_000160975#BCERE0007_RS25175
RRLytTRCurrent focus
4 953 416-4 954 156 nt · Reverse (-)
BCERE0007_RS25180GCF_000160975#BCERE0007_RS25180
HKClassic
4 954 134-4 955 903 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS25175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769404
Simplified PFAM architecture for RROC_0769404
PFAM domain coverage: 206 / 246 aa (83.7%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[149-244]
- Domain count: 2
- Matched identifier: RROC_0769404
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 149-244 ; LytTR 149-244
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS25175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000160975
AssemblyASM16097v1 · Chromosomehaploid
Genome composition5 674 808 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key