1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000295:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0007_RS01820
Histidine kinase, Classic
Bacillus mycoides · GCF_000160975
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160975#BCERE0007_RS01820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 672 aa (44.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation3 items
2 HisKA#2
459-516 aa · 58 aa · 8.6% of protein
Raw token
HisKA:459:0.0000000000000331:516:58:643 HATPase_c#3
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:3.64e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000295:163:143:133#HisKA:459:0.0000000000000331:516:58:64#HATPase_c:568:3.64e-19:665:103:109
- Domain description: 1 GAF,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160975::NZ_CM000719.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span322244-324262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0007_3420RefSeq proteinWP_002010154.1
Context group ID
GCF_000160975::NZ_CM000719.1::G00004Context members
BCERE0007_RS01820
Partner locus tags
BCERE0007_RS01820
Partner old locus tags
bcere0007_3420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002010154.1Primary protein accession used for annex mappings.
UniProt accessionJ8GZ16Primary UniProt accession resolved in the annex database.
UniProt IDJ8GZ16_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0007_RS01820Primary locus identifier stored in the genes table.
Old locus tagbcere0007_3420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000719.1Sequence record reported by the local genomic context database.
Genomic interval322 244-324 262 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span322 244-324 262 ntGCF_000160975::NZ_CM000719.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160975::NZ_CM000719.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000719.1All displayed genes belong to this local TCS context.
Neighborhood span322 244-324 262 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
322 244 nt324 262 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERE0007_RS01820GCF_000160975#BCERE0007_RS01820
HKClassicCurrent focus
322 244-324 262 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS01820The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0838898
Simplified PFAM architecture for HKOC_0838898
PFAM domain coverage: 300 / 672 aa (44.6%)
1 aa672 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[459-516] | HATPase_c[565-666]
- Domain count: 3
- Matched identifier: HKOC_0838898
- Positioned domains: GAF 24-163 ; HisKA 459-516 ; HATPase_c 565-666
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS01820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000160975
AssemblyASM16097v1 · Chromosomehaploid
Genome composition5 674 808 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key