1 Response_reg#1
4-72 aa · 69 aa · 34.3% of protein
Raw token
Response_reg:4:0.0000000000000411:72:71:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0346_RS15230
Response regulator LytTR family
Enterococcus faecalis EnGen0297 · GCF_000160155
ClassRRTypeLytTRLength201 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160155#HMPREF0346_RS15230Stable P2CS identifier used across views.
GenomeGCF_000160155Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 201 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa201 aa
Domain-by-domain annotation2 items
2 LytTR#2
102-199 aa · 98 aa · 48.8% of protein
Raw token
LytTR:102:1.3e-39:199:98:98- Raw architecture: Response_reg:4:0.0000000000000411:72:71:111#LytTR:102:1.3e-39:199:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160155::NZ_GG668823.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span267059-269620Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0346_1775RefSeq proteinWP_002387405.1
Context group ID
GCF_000160155::NZ_GG668823.1::G00006Context members
HMPREF0346_RS15230HMPREF0346_RS0103650
Partner locus tags
HMPREF0346_RS15230HMPREF0346_RS0103650
Partner old locus tags
HMPREF0346_1775HMPREF0346_1776
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002387405.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0346_RS15230Primary locus identifier stored in the genes table.
Old locus tagHMPREF0346_1775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG668823.1Sequence record reported by the local genomic context database.
Genomic interval267 059-267 665 nt607 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span267 059-269 620 ntGCF_000160155::NZ_GG668823.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160155::NZ_GG668823.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG668823.1All displayed genes belong to this local TCS context.
Neighborhood span267 059-269 620 nt2 562 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 059 nt269 620 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0346_RS15230GCF_000160155#HMPREF0346_RS15230
RRLytTRCurrent focus
267 059-267 665 nt · Reverse (-)
HMPREF0346_RS0103650GCF_000160155#HMPREF0346_RS0103650
HKClassic
267 865-269 620 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS15115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843426
Simplified PFAM architecture for RROC_0843426
PFAM domain coverage: 207 / 242 aa (85.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[143-239]
- Domain count: 2
- Matched identifier: RROC_0843426
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 143-239 ; LytTR 143-239
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS15115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 491 075 · GCF_000160155
AssemblyASM16015v1 · Scaffoldhaploid
Genome composition3 129 930 bp · 37,0% GCEnterococcus faecalis EnGen0297
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key