1 HisKA#1
228-294 aa · 67 aa · 14.5% of protein
Raw token
HisKA:228:0.0000000000723:294:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SUBVAR_RS01660
Histidine kinase, Classic
Subdoligranulum variabile DSM 15176 · GCF_000157955
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157955#SUBVAR_RS01660Stable P2CS identifier used across views.
GenomeGCF_000157955Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Subdoligranulum
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 462 aa (38.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-451 aa · 109 aa · 23.6% of protein
Raw token
HATPase_c:343:2.56e-22:451:109:109- Raw architecture: HisKA:228:0.0000000000723:294:67:64#HATPase_c:343:2.56e-22:451:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157955::NZ_GG704769.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span383184-385278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSUBVAR_04366RefSeq proteinWP_007045805.1
Context group ID
GCF_000157955::NZ_GG704769.1::G00018Context members
SUBVAR_RS01660SUBVAR_RS01665
Partner locus tags
SUBVAR_RS01660SUBVAR_RS01665
Partner old locus tags
SUBVAR_04366SUBVAR_04367
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007045805.1Primary protein accession used for annex mappings.
UniProt accessionD1PJ46Primary UniProt accession resolved in the annex database.
UniProt IDD1PJ46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSUBVAR_RS01660Primary locus identifier stored in the genes table.
Old locus tagSUBVAR_04366Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG704769.1Sequence record reported by the local genomic context database.
Genomic interval383 184-384 572 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span383 184-385 278 ntGCF_000157955::NZ_GG704769.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157955::NZ_GG704769.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG704769.1All displayed genes belong to this local TCS context.
Neighborhood span383 184-385 278 nt2 095 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 184 nt385 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SUBVAR_RS01660GCF_000157955#SUBVAR_RS01660
HKClassicCurrent focus
383 184-384 572 nt · Reverse (-)
SUBVAR_RS01665GCF_000157955#SUBVAR_RS01665
RROmpR
384 577-385 278 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157955#SUBVAR_RS01660The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1807474
Simplified PFAM architecture for HKOC_1807474
PFAM domain coverage: 175 / 462 aa (37.9%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[229-293] | HATPase_c[343-452]
- Domain count: 2
- Matched identifier: HKOC_1807474
- Positioned domains: HisKA 229-293 ; HATPase_c 343-452
Cluster members and taxonomy
Representative gene: GCF_000157955#SUBVAR_RS01660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 471 · GCF_000157955
AssemblyASM15795v1 · Scaffoldhaploid
Genome composition3 245 471 bp · 58,0% GCSubdoligranulum variabile DSM 15176
Signal transduction countsGenes 59 · HK 27 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusSubdoligranulum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Subdoligranulum
Related genes
Preview from the same derived genome key