1 PAS_4#1
225-323 aa · 99 aa · 18.3% of protein
Raw token
PAS_4:225:0.0000000000229:323:111:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SUBVAR_RS01050
Probable incomplete histidine kinase
Subdoligranulum variabile DSM 15176 · GCF_000157955
ClassHKTypeClassicLength540 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_000157955#SUBVAR_RS01050Stable P2CS identifier used across views.
GenomeGCF_000157955Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Subdoligranulum
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 SUBVAR_RS01050MIST4
Domain signature
Compact overview inferred from the domain field
PAS_4HATPase_c
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 540 aa (38.7%)Merged over positioned domains only.
Domain description1 PAS_4,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
427-536 aa · 110 aa · 20.4% of protein
Raw token
HATPase_c:427:2.86e-23:536:113:109- Raw architecture: PAS_4:225:0.0000000000229:323:111:110#HATPase_c:427:2.86e-23:536:113:109
- Domain description: 1 PAS_4,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSUBVAR_RS01050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 471 · GCF_000157955
AssemblyASM15795v1 · Scaffoldhaploid
Genome composition3 245 471 bp · 58,0% GCSubdoligranulum variabile DSM 15176
Signal transduction countsGenes 59 · HK 27 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusSubdoligranulum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Subdoligranulum
Related genes
Preview from the same derived genome key