1 HAMP#1
182-247 aa · 66 aa · 13.6% of protein
Raw token
HAMP:182:0.00000000000000646:247:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFKG_RS16345
Histidine kinase, Classic
Enterococcus faecalis Fly1 · GCF_000157415
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157415#EFKG_RS16345Stable P2CS identifier used across views.
GenomeGCF_000157415Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 485 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-324 aa · 67 aa · 13.8% of protein
Raw token
HisKA:258:0.00000000000000423:324:67:643 HATPase_c#3
369-478 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:369:2.59e-31:478:110:109- Raw architecture: HAMP:182:0.00000000000000646:247:66:69#HisKA:258:0.00000000000000423:324:67:64#HATPase_c:369:2.59e-31:478:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157415::NZ_GG692670.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1351597-1353773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFKG_01273RefSeq proteinWP_002377728.1
Context group ID
GCF_000157415::NZ_GG692670.1::G00008Context members
EFKG_RS16345EFKG_RS16350
Partner locus tags
EFKG_RS16345EFKG_RS16350
Partner old locus tags
EFKG_01273EFKG_01274
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002377728.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFKG_RS16345Primary locus identifier stored in the genes table.
Old locus tagEFKG_01273Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692670.1Sequence record reported by the local genomic context database.
Genomic interval1 351 597-1 353 054 nt1 458 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 351 597-1 353 773 ntGCF_000157415::NZ_GG692670.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157415::NZ_GG692670.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692670.1All displayed genes belong to this local TCS context.
Neighborhood span1 351 597-1 353 773 nt2 177 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 351 597 nt1 353 773 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFKG_RS16345GCF_000157415#EFKG_RS16345
HKClassicCurrent focus
1 351 597-1 353 054 nt · Reverse (-)
EFKG_RS16350GCF_000157415#EFKG_RS16350
RROmpR
1 353 054-1 353 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157415#EFKG_RS16345The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1575877
Simplified PFAM architecture for HKOC_1575877
PFAM domain coverage: 227 / 485 aa (46.8%)
1 aa485 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-247] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1575877
- Positioned domains: HAMP 196-247 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_000157415#EFKG_RS16345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 649 · GCF_000157415
AssemblyASM15741v1 · Scaffoldhaploid
Genome composition2 834 288 bp · 37,5% GCEnterococcus faecalis Fly1
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key