1 Response_reg#1
3-114 aa · 112 aa · 73.2% of protein
Raw token
Response_reg:3:2.61e-23:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFKG_RS15970
Response regulator, CheY family
Enterococcus faecalis Fly1 · GCF_000157415
ClassRRTypeCheYLength153 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157415#EFKG_RS15970Stable P2CS identifier used across views.
GenomeGCF_000157415Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length153 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 153 aa (73.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa153 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:2.61e-23:114:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157415::NZ_GG692670.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1272387-1272848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFKG_01199RefSeq proteinWP_228841345.1
Context group ID
GCF_000157415::NZ_GG692670.1::G00007Context members
EFKG_RS15970
Partner locus tags
EFKG_RS15970
Partner old locus tags
EFKG_01199
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228841345.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFKG_RS15970Primary locus identifier stored in the genes table.
Old locus tagEFKG_01199Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692670.1Sequence record reported by the local genomic context database.
Genomic interval1 272 387-1 272 848 nt462 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 272 387-1 272 848 ntGCF_000157415::NZ_GG692670.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157415::NZ_GG692670.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692670.1All displayed genes belong to this local TCS context.
Neighborhood span1 272 387-1 272 848 nt462 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 272 387 nt1 272 848 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFKG_RS15970GCF_000157415#EFKG_RS15970
RRCheYCurrent focus
1 272 387-1 272 848 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157415#EFKG_RS15970The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2219539
Simplified PFAM architecture for RROC_2219539
PFAM domain coverage: 111 / 153 aa (72.5%)
1 aa153 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-113]
- Domain count: 1
- Matched identifier: RROC_2219539
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113
Cluster members and taxonomy
Representative gene: GCF_000157415#EFKG_RS15970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 649 · GCF_000157415
AssemblyASM15741v1 · Scaffoldhaploid
Genome composition2 834 288 bp · 37,5% GCEnterococcus faecalis Fly1
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key