1 CheW#1
15-150 aa · 136 aa · 45.0% of protein
Raw token
CheW:15:1.92e-33:150:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS02800
Response regulator CheV family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS02800Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage257 / 302 aa (85.1%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Response_reg#2
174-294 aa · 121 aa · 40.1% of protein
Raw token
Response_reg:174:4.15e-22:294:122:111- Raw architecture: CheW:15:1.92e-33:150:138:138#Response_reg:174:4.15e-22:294:122:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692715.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44388-45296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_05626RefSeq proteinWP_006855761.1
Context group ID
GCF_000156535::NZ_GG692715.1::G00060Context members
ROSINTL182_RS02800
Partner locus tags
ROSINTL182_RS02800
Partner old locus tags
ROSINTL182_05626
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006855761.1Primary protein accession used for annex mappings.
UniProt accessionD4KZE7Primary UniProt accession resolved in the annex database.
UniProt IDD4KZE7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS02800Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_05626Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692715.1Sequence record reported by the local genomic context database.
Genomic interval44 388-45 296 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 388-45 296 ntGCF_000156535::NZ_GG692715.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692715.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692715.1All displayed genes belong to this local TCS context.
Neighborhood span44 388-45 296 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 388 nt45 296 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS02800GCF_000156535#ROSINTL182_RS02800
RRCheVCurrent focus
44 388-45 296 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS02800The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568534
Simplified PFAM architecture for RROC_0568534
PFAM domain coverage: 255 / 302 aa (84.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[15-149] | Response_reg[174-293]
- Domain count: 2
- Matched identifier: RROC_0568534
- Positioned domains: CheW 15-149 ; CheW 15-149 ; Response_reg 174-293 ; Response_reg 174-293
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS02800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key