1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:8.49e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS01210
Response regulator OmpR family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS01210Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:1.71e-30:227:77:77- Raw architecture: Response_reg:4:8.49e-36:113:111:111#Trans_reg_C:151:1.71e-30:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692713.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span235939-238717Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_05262RefSeq proteinWP_044998451.1
Context group ID
GCF_000156535::NZ_GG692713.1::G00066Context members
ROSINTL182_RS01205ROSINTL182_RS01210
Partner locus tags
ROSINTL182_RS01205ROSINTL182_RS01210
Partner old locus tags
ROSINTL182_05261ROSINTL182_05262
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044998451.1Primary protein accession used for annex mappings.
UniProt accessionA0AAQ2UEB3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAQ2UEB3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS01210Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_05262Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692713.1Sequence record reported by the local genomic context database.
Genomic interval238 025-238 717 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span235 939-238 717 ntGCF_000156535::NZ_GG692713.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692713.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692713.1All displayed genes belong to this local TCS context.
Neighborhood span235 939-238 717 nt2 779 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 939 nt238 717 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS01205GCF_000156535#ROSINTL182_RS01205
HKClassic
235 939-237 960 nt · Reverse (-)
ROSINTL182_RS01210GCF_000156535#ROSINTL182_RS01210
RROmpRCurrent focus
238 025-238 717 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS01210The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200176
Simplified PFAM architecture for RROC_1200176
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1200176
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS01210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key