1 Response_reg#1
319-427 aa · 109 aa · 25.1% of protein
Raw token
Response_reg:319:1.36e-32:427:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS14120
Response regulator, unclassified
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeunclassifiedLength435 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS14120Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length435 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 435 aa (25.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa435 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:319:1.36e-32:427:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663524.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span620137-621444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01941RefSeq proteinWP_005603824.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00009Context members
BUTYVIB_RS14120
Partner locus tags
BUTYVIB_RS14120
Partner old locus tags
BUTYVIB_01941
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005603824.1Primary protein accession used for annex mappings.
UniProt accessionD4S1H1Primary UniProt accession resolved in the annex database.
UniProt IDD4S1H1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS14120Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01941Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval620 137-621 444 nt1 308 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span620 137-621 444 ntGCF_000156015::NZ_GG663524.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span620 137-621 444 nt1 308 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
620 137 nt621 444 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS14120GCF_000156015#BUTYVIB_RS14120
RRunclassifiedCurrent focus
620 137-621 444 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS14120The current gene is the representative for this cluster.
PFAM architectureCheX + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0340089
Simplified PFAM architecture for RROC_0340089
PFAM domain coverage: 189 / 435 aa (43.4%)
1 aa435 aa
CheXResponse_reg
- Simplified architecture: CheX + Response_reg
- Raw architecture: CheX[188-266] | Response_reg[319-428]
- Domain count: 2
- Matched identifier: RROC_0340089
- Positioned domains: CheX 188-266 ; CheX 188-266 ; Response_reg 319-428 ; Response_reg 319-428
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS14120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key