1 HisKA#1
405-469 aa · 65 aa · 6.6% of protein
Raw token
HisKA:405:5.87e-20:469:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS12590
Histidine kinase, Unorthodox
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeUnorthodoxLength986 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS12590Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length986 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage378 / 986 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa986 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
516-627 aa · 112 aa · 11.4% of protein
Raw token
HATPase_c:516:1.24e-26:627:112:1093 Response_reg#3
662-776 aa · 115 aa · 11.7% of protein
Raw token
Response_reg:662:9.18e-29:776:115:1114 Hpt#4
815-900 aa · 86 aa · 8.7% of protein
Raw token
Hpt:815:0.000023:900:87:84- Raw architecture: HisKA:405:5.87e-20:469:65:64#HATPase_c:516:1.24e-26:627:112:109#Response_reg:662:9.18e-29:776:115:111#Hpt:815:0.000023:900:87:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663523.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51691-54651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01218RefSeq proteinWP_005602637.1
Context group ID
GCF_000156015::NZ_GG663523.1::G00020Context members
BUTYVIB_RS12590
Partner locus tags
BUTYVIB_RS12590
Partner old locus tags
BUTYVIB_01218
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005602637.1Primary protein accession used for annex mappings.
UniProt accessionD4RZF2Primary UniProt accession resolved in the annex database.
UniProt IDD4RZF2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS12590Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01218Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663523.1Sequence record reported by the local genomic context database.
Genomic interval51 691-54 651 nt2 961 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 691-54 651 ntGCF_000156015::NZ_GG663523.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663523.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663523.1All displayed genes belong to this local TCS context.
Neighborhood span51 691-54 651 nt2 961 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 691 nt54 651 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS12590GCF_000156015#BUTYVIB_RS12590
HKUnorthodoxCurrent focus
51 691-54 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS12590The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0300047
Simplified PFAM architecture for HKOC_0300047
PFAM domain coverage: 291 / 986 aa (29.5%)
1 aa986 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[405-469] | HATPase_c[517-628] | Response_reg[662-775]
- Domain count: 3
- Matched identifier: HKOC_0300047
- Positioned domains: HisKA 405-469 ; HATPase_c 517-628 ; Response_reg 662-775
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS12590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key