Gene detail

BUTYVIB_RS12585

Histidine kinase, Classic

Eshraghiella crossota DSM 2876 · GCF_000156015

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000156015#BUTYVIB_RS12585Stable P2CS identifier used across views.

GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella

Selected clusterHKOC_2676140Run 6 · 3 sequences · id 100% · cov 80% · representative

External referencesWP_052529852.1 · MIST4 BUTYVIB_RS12585RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_c

Protein length371 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage146 / 371 aa (39.4%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa371 aa

Domain-by-domain annotation2 items

1 HisKA_3#1

179-240 aa · 62 aa · 16.7% of protein

Raw tokenHisKA_3:179:5.6e-16:240:64:68

2 HATPase_c#2

283-366 aa · 84 aa · 22.6% of protein

Raw tokenHATPase_c:283:0.0000000123:366:101:109

Raw architecture: HisKA_3:179:5.6e-16:240:64:68#HATPase_c:283:0.0000000123:366:101:109
Domain description: 1 HisKA_3,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000156015::NZ_GG663523.1::G00019

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span43682-45419Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBUTYVIB_01212RefSeq proteinWP_052529852.1

Context group IDGCF_000156015::NZ_GG663523.1::G00019

Context members

BUTYVIB_RS05850BUTYVIB_RS12585

Partner locus tags

BUTYVIB_RS05850BUTYVIB_RS12585

Partner old locus tags

BUTYVIB_01211BUTYVIB_01212

Partner protein IDs

WP_040331964.1 WP_052529852.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_052529852.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBUTYVIB_RS12585Primary locus identifier stored in the genes table.

Old locus tagBUTYVIB_01212Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_GG663523.1Sequence record reported by the local genomic context database.

Genomic interval44 304-45 419 nt1 116 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span43 682-45 419 ntGCF_000156015::NZ_GG663523.1::G00019

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000156015::NZ_GG663523.1::G00019

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_GG663523.1All displayed genes belong to this local TCS context.

Neighborhood span43 682-45 419 nt1 738 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

43 682 nt45 419 nt

+-BUTYVIB_RS05850 BUTYVIB_RS12585

Neighborhood gene cards

2 genes in the current local neighborhood.

BUTYVIB_RS05850GCF_000156015#BUTYVIB_RS05850

RRNarL

43 682-44 302 nt · Reverse (-)

Old locus BUTYVIB_01211RefSeq WP_040331964.1

Open gene

BUTYVIB_RS12585GCF_000156015#BUTYVIB_RS12585

HKClassicCurrent focus

44 304-45 419 nt · Reverse (-)

Old locus BUTYVIB_01212RefSeq WP_052529852.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2676140HK

Run 63 sequencesid 100%cov 80%

PFAM HisKA_3

Current gene is the representative sequence.

Selected clusterHKOC_2676140Run 6 · HK · 3 sequences

Representative sequenceGCF_000156015#BUTYVIB_RS12585The current gene is the representative for this cluster.

PFAM architectureHisKA_31 domain in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2676140

Simplified PFAM architecture for HKOC_2676140

PFAM domain coverage: 64 / 371 aa (17.3%)

1 aa371 aa

HisKA_3

Simplified architecture: HisKA_3
Raw architecture: HisKA_3[179-242]
Domain count: 1
Matched identifier: HKOC_2676140
Positioned domains: HisKA_3 179-242

Cluster members and taxonomy

Representative gene: GCF_000156015#BUTYVIB_RS12585

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015

AssemblyASM15601v1 · Scaffoldhaploid

Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876

Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella

Open genome Search genes in genome Search HK genes NCBI assembly files

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