1 Response_reg#1
3-117 aa · 115 aa · 47.7% of protein
Raw token
Response_reg:3:1.02e-16:117:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS12160
Response regulator LytTR family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS12160Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 241 aa (85.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-233 aa · 92 aa · 38.2% of protein
Raw token
LytTR:142:0.00000000000000302:233:97:98- Raw architecture: Response_reg:3:1.02e-16:117:119:111#LytTR:142:0.00000000000000302:233:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663526.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27867-28592Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_02536RefSeq proteinWP_040332431.1
Context group ID
GCF_000156015::NZ_GG663526.1::G00001Context members
BUTYVIB_RS12160
Partner locus tags
BUTYVIB_RS12160
Partner old locus tags
BUTYVIB_02536
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040332431.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS12160Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_02536Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663526.1Sequence record reported by the local genomic context database.
Genomic interval27 867-28 592 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 867-28 592 ntGCF_000156015::NZ_GG663526.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663526.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663526.1All displayed genes belong to this local TCS context.
Neighborhood span27 867-28 592 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 867 nt28 592 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS12160GCF_000156015#BUTYVIB_RS12160
RRLytTRCurrent focus
27 867-28 592 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS12160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862789
Simplified PFAM architecture for RROC_0862789
PFAM domain coverage: 207 / 241 aa (85.9%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-118] | LytTR[143-233]
- Domain count: 2
- Matched identifier: RROC_0862789
- Positioned domains: Response_reg 3-118 ; Response_reg 3-118 ; LytTR 143-233 ; LytTR 143-233
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS12160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key