1 sCache_like#1
69-131 aa · 63 aa · 14.4% of protein
Raw token
sCache_like:69:0.000000938:131:63:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS11100
Histidine kinase, Classic
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeClassicLength437 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS11100Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length437 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 437 aa (54.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa437 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-285 aa · 67 aa · 15.3% of protein
Raw token
HisKA:219:2.18e-19:285:67:643 HATPase_c#3
328-437 aa · 110 aa · 25.2% of protein
Raw token
HATPase_c:328:1.58e-31:437:110:109- Raw architecture: sCache_like:69:0.000000938:131:63:114#HisKA:219:2.18e-19:285:67:64#HATPase_c:328:1.58e-31:437:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663524.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1008164-1010163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_02319RefSeq proteinWP_040332395.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00017Context members
BUTYVIB_RS11100BUTYVIB_RS11105
Partner locus tags
BUTYVIB_RS11100BUTYVIB_RS11105
Partner old locus tags
BUTYVIB_02319BUTYVIB_02320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040332395.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS11100Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_02319Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval1 008 164-1 009 477 nt1 314 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 008 164-1 010 163 ntGCF_000156015::NZ_GG663524.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span1 008 164-1 010 163 nt2 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 008 164 nt1 010 163 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS11100GCF_000156015#BUTYVIB_RS11100
HKClassicCurrent focus
1 008 164-1 009 477 nt · Reverse (-)
BUTYVIB_RS11105GCF_000156015#BUTYVIB_RS11105
RROmpR
1 009 486-1 010 163 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025148445#NQ527_RS02595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2077545
Simplified PFAM architecture for HKOC_2077545
PFAM domain coverage: 173 / 440 aa (39.3%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[222-288] | HATPase_c[332-437]
- Domain count: 2
- Matched identifier: HKOC_2077545
- Positioned domains: HisKA 222-288 ; HATPase_c 332-437
Cluster members and taxonomy
Representative gene: GCF_025148445#NQ527_RS02595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key