1 Response_reg#1
5-118 aa · 114 aa · 30.4% of protein
Raw token
Response_reg:5:5.69e-24:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS10485
Response regulator RpfG family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeRpfGLength375 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS10485Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage248 / 375 aa (66.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HD#2
179-312 aa · 134 aa · 35.7% of protein
Raw token
HD:179:8.64e-16:312:134:110- Raw architecture: Response_reg:5:5.69e-24:118:115:111#HD:179:8.64e-16:312:134:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663524.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span884342-885469Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_02187RefSeq proteinWP_005604216.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00014Context members
BUTYVIB_RS10485
Partner locus tags
BUTYVIB_RS10485
Partner old locus tags
BUTYVIB_02187
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005604216.1Primary protein accession used for annex mappings.
UniProt accessionD4S265Primary UniProt accession resolved in the annex database.
UniProt IDD4S265_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS10485Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_02187Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval884 342-885 469 nt1 128 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span884 342-885 469 ntGCF_000156015::NZ_GG663524.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span884 342-885 469 nt1 128 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
884 342 nt885 469 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS10485GCF_000156015#BUTYVIB_RS10485
RRRpfGCurrent focus
884 342-885 469 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS10485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0432366
Simplified PFAM architecture for RROC_0432366
PFAM domain coverage: 230 / 375 aa (61.3%)
1 aa375 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[5-117] | HD_5[216-332]
- Domain count: 2
- Matched identifier: RROC_0432366
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HD_5 216-332 ; HD_5 216-332
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS10485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key