1 PAS_3#1
543-610 aa · 68 aa · 6.2% of protein
Raw token
PAS_3:543:0.0000444:610:71:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS10415
Histidine kinase, Hybrid
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeHybridLength1103 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS10415Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1103 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 1103 aa (33.5%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1103 aa
Domain-by-domain annotation4 items
2 HisKA#2
648-714 aa · 67 aa · 6.1% of protein
Raw token
HisKA:648:3.42e-16:714:67:643 HATPase_c#3
762-879 aa · 118 aa · 10.7% of protein
Raw token
HATPase_c:762:5.33e-26:879:118:1094 Response_reg#4
981-1096 aa · 116 aa · 10.5% of protein
Raw token
Response_reg:981:2.77e-29:1096:116:111- Raw architecture: PAS_3:543:0.0000444:610:71:89#HisKA:648:3.42e-16:714:67:64#HATPase_c:762:5.33e-26:879:118:109#Response_reg:981:2.77e-29:1096:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663524.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span869278-873785Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_02171RefSeq proteinWP_005604194.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00013Context members
BUTYVIB_RS10405BUTYVIB_RS10415
Partner locus tags
BUTYVIB_RS10405BUTYVIB_RS10415
Partner old locus tags
BUTYVIB_02169BUTYVIB_02171
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005604194.1Primary protein accession used for annex mappings.
UniProt accessionD4S249Primary UniProt accession resolved in the annex database.
UniProt IDD4S249_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS10415Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_02171Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval870 474-873 785 nt3 312 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span869 278-873 785 ntGCF_000156015::NZ_GG663524.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span869 278-873 785 nt4 508 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
869 278 nt873 785 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS10405GCF_000156015#BUTYVIB_RS10405
RRSpo0A
869 278-870 060 nt · Reverse (-)
BUTYVIB_RS10415GCF_000156015#BUTYVIB_RS10415
HKHybridCurrent focus
870 474-873 785 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS10415The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0229678
Simplified PFAM architecture for HKOC_0229678
PFAM domain coverage: 297 / 1103 aa (26.9%)
1 aa1103 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[648-714] | HATPase_c[762-878] | Response_reg[981-1093]
- Domain count: 3
- Matched identifier: HKOC_0229678
- Positioned domains: HisKA 648-714 ; HATPase_c 762-878 ; Response_reg 981-1093
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS10415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key