1 Response_reg#1
6-114 aa · 109 aa · 29.5% of protein
Raw token
Response_reg:6:3.82e-23:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS08920
Response regulator, CheB family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeCheBLength369 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS08920Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length369 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage291 / 369 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa369 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
181-362 aa · 182 aa · 49.3% of protein
Raw token
CheB_methylest:181:4.82e-79:362:182:177- Raw architecture: Response_reg:6:3.82e-23:114:110:111#CheB_methylest:181:4.82e-79:362:182:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663524.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span528275-531436Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01856RefSeq proteinWP_005603705.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00007Context members
BUTYVIB_RS08915BUTYVIB_RS08920
Partner locus tags
BUTYVIB_RS08915BUTYVIB_RS08920
Partner old locus tags
BUTYVIB_01855BUTYVIB_01856
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005603705.1Primary protein accession used for annex mappings.
UniProt accessionD4S186Primary UniProt accession resolved in the annex database.
UniProt IDD4S186_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS08920Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01856Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval530 327-531 436 nt1 110 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span528 275-531 436 ntGCF_000156015::NZ_GG663524.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span528 275-531 436 nt3 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
528 275 nt531 436 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS08915GCF_000156015#BUTYVIB_RS08915
HKCheA
528 275-530 326 nt · Reverse (-)
BUTYVIB_RS08920GCF_000156015#BUTYVIB_RS08920
RRCheBCurrent focus
530 327-531 436 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS08920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0442638
Simplified PFAM architecture for RROC_0442638
PFAM domain coverage: 291 / 369 aa (78.9%)
1 aa369 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[6-114] | CheB_methylest[181-362]
- Domain count: 2
- Matched identifier: RROC_0442638
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; CheB_methylest 181-362 ; CheB_methylest 181-362
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS08920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key